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Chlorine in PDB 5nqp: Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151.

Protein crystallography data

The structure of Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151., PDB code: 5nqp was solved by S.Johnson, S.Hollingshead, S.M.Lea, C.M.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.75 / 2.86
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 100.720, 171.420, 131.460, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 23.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151. (pdb code 5nqp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151., PDB code: 5nqp:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5nqp

Go back to Chlorine Binding Sites List in 5nqp
Chlorine binding site 1 out of 4 in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl408

b:65.0
occ:1.00
NH1 C:ARG312 2.9 88.4 1.0
N C:PHE194 3.6 57.0 1.0
CZ C:ARG312 4.0 93.6 1.0
CA C:GLN193 4.1 64.5 1.0
CD C:ARG312 4.2 57.2 1.0
C C:GLN193 4.3 66.3 1.0
CB C:PHE194 4.3 57.8 1.0
NE C:ARG312 4.5 78.6 1.0
CA C:PHE194 4.5 55.1 1.0
O C:PHE194 4.5 61.6 1.0
O C:ILE311 4.7 65.7 1.0
CG C:GLN193 4.7 71.2 1.0
O C:ARG192 4.9 72.9 1.0
NH2 C:ARG312 4.9 0.2 1.0

Chlorine binding site 2 out of 4 in 5nqp

Go back to Chlorine Binding Sites List in 5nqp
Chlorine binding site 2 out of 4 in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl409

b:63.4
occ:1.00
NZ C:LYS150D 2.8 0.6 1.0
ND2 C:ASN150H 3.1 0.7 1.0
CG C:ASN150H 3.8 0.7 1.0
OD1 C:ASN150H 3.9 99.9 1.0
CE C:LYS150D 4.0 0.5 1.0
CD C:LYS150D 4.9 92.9 1.0

Chlorine binding site 3 out of 4 in 5nqp

Go back to Chlorine Binding Sites List in 5nqp
Chlorine binding site 3 out of 4 in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:94.7
occ:1.00
N A:GLY290 3.9 61.0 1.0
CA A:GLY290 4.0 49.2 1.0
C A:LEU289 4.2 61.9 1.0
O A:ALA300 4.2 51.1 1.0
CG2 A:ILE199 4.4 54.1 1.0
O A:LEU289 4.5 70.2 1.0
OG A:SER288 4.6 74.3 1.0
CG1 A:VAL272 4.6 63.6 1.0
CE1 A:HIS203 4.9 68.2 1.0
CA A:LEU289 4.9 58.3 1.0
CD1 A:ILE199 5.0 58.5 1.0

Chlorine binding site 4 out of 4 in 5nqp

Go back to Chlorine Binding Sites List in 5nqp
Chlorine binding site 4 out of 4 in the Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Fhbp(V1.4):Pora(P1.16) Chimera. Fusion at Fhbp Position 151. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:98.0
occ:1.00
CB A:ALA200 3.3 74.9 1.0
N A:THR100 3.8 68.4 1.0
OG1 A:THR100 3.9 74.2 1.0
CB A:THR100 4.0 57.9 1.0
N A:GLY201 4.4 58.2 1.0
CA A:THR100 4.5 62.0 1.0
CA A:ALA200 4.5 68.6 1.0
CA A:LEU99 4.6 62.5 1.0
C A:LEU99 4.7 69.7 1.0
O A:SER98 4.9 74.0 1.0
C A:ALA200 4.9 65.2 1.0

Reference:

S.Hollingshead, I.Jongerius, R.M.Exley, S.Johnson, S.M.Lea, C.M.Tang. Structure-Based Design of Chimeric Antigens For Multivalent Protein Vaccines. Nat Commun V. 9 1051 2018.
ISSN: ESSN 2041-1723
PubMed: 29535307
DOI: 10.1038/S41467-018-03146-7
Page generated: Fri Jul 26 13:48:57 2024

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