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Chlorine in PDB 5nu9: Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate

Protein crystallography data

The structure of Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate, PDB code: 5nu9 was solved by M.Perduca, H.L.Monaco, M.Galliano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.50
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 102.840, 102.840, 73.164, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate (pdb code 5nu9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate, PDB code: 5nu9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5nu9

Go back to Chlorine Binding Sites List in 5nu9
Chlorine binding site 1 out of 2 in the Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:27.2
occ:1.00
NH2 A:ARG153 3.2 27.1 0.4
NH1 A:ARG153 3.3 27.7 0.4
NH1 A:ARG153 3.4 27.0 0.6
O A:ALA162 3.6 23.4 1.0
CZ A:ARG153 3.7 25.0 0.4
CA A:ARG163 3.7 22.7 1.0
CG A:ARG163 3.9 28.4 1.0
C A:ALA162 4.1 23.0 1.0
CB A:ARG163 4.2 26.1 1.0
N A:ARG163 4.2 21.9 1.0
CZ A:ARG153 4.5 23.2 0.6
NH2 A:ARG153 4.7 21.5 0.6
O A:HOH313 4.7 26.9 1.0
C A:ARG163 4.8 21.0 1.0
O A:HOH348 4.9 32.3 1.0

Chlorine binding site 2 out of 2 in 5nu9

Go back to Chlorine Binding Sites List in 5nu9
Chlorine binding site 2 out of 2 in the Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human Amniotic Fluid RBP4 Saturated with Palmitate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:46.3
occ:1.00
O A:HOH401 2.9 41.4 1.0
CG A:LYS150 4.0 33.2 1.0
CE A:LYS150 4.2 59.1 1.0
CD A:LYS150 4.6 44.6 1.0
CB A:LYS150 5.0 30.1 1.0

Reference:

M.Perduca, S.Nicolis, B.Mannucci, M.Galliano, H.L.Monaco. Human Plasma Retinol-Binding Protein (RBP4) Is Also A Fatty Acid-Binding Protein. Biochim. Biophys. Acta V.1863 458 2018.
ISSN: ISSN 0006-3002
PubMed: 29414511
DOI: 10.1016/J.BBALIP.2018.01.010
Page generated: Fri Jul 26 13:54:14 2024

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