Chlorine in PDB 5o0k: Deglycosylated Nogo Receptor with Native Disulfide Structure

The structure of Deglycosylated Nogo Receptor with Native Disulfide Structure, PDB code: 5o0k was solved by M.F.Pronker, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.78 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	151.624, 46.586, 120.670, 90.00, 123.45, 90.00
R / Rfree (%)	17.9 / 23.4

The binding sites of Chlorine atom in the Deglycosylated Nogo Receptor with Native Disulfide Structure (pdb code 5o0k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Deglycosylated Nogo Receptor with Native Disulfide Structure, PDB code: 5o0k:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl407 b:80.3 occ:1.00 OE1 A:GLN49 3.6 63.0 1.0 CG A:ARG68 3.8 47.6 1.0 CB A:ARG68 4.0 42.2 1.0 NE2 A:GLN49 4.1 65.8 1.0 CD A:GLN49 4.1 62.8 1.0 NE A:ARG68 4.5 57.8 1.0 CD A:ARG68 4.7 49.4 1.0

Chlorine binding site 2 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl408 b:0.4 occ:1.00 CE1 A:HIS202 3.6 53.8 1.0 NH1 A:ARG223 3.6 68.4 1.0 NH2 A:ARG199 3.7 76.3 1.0 NE2 A:HIS202 3.8 54.9 1.0 OD2 A:ASP224 4.0 40.9 1.0 OD1 A:ASP224 4.2 49.5 1.0 CG A:ASP224 4.4 42.5 1.0 CZ A:ARG199 4.6 76.3 1.0 CZ A:ARG223 4.7 66.9 1.0 ND1 A:HIS202 4.9 49.1 1.0 NH2 A:ARG223 5.0 69.5 1.0

Chlorine binding site 3 out of 3 in the Deglycosylated Nogo Receptor with Native Disulfide Structure


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Deglycosylated Nogo Receptor with Native Disulfide Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl408 b:87.5 occ:1.00 ND2 B:ASN258 3.8 34.1 1.0 CB B:ASP259 4.2 38.8 1.0 CG B:ASP259 4.6 63.2 1.0 OD2 B:ASP259 4.7 72.2 1.0 CG B:ASN258 4.9 32.3 1.0

M.F.Pronker, R.P.Tas, H.C.Vlieg, B.J.C.Janssen. Nogo Receptor Crystal Structures with A Native Disulfide Pattern Suggest A Novel Mode of Self-Interaction. Acta Crystallogr D Struct V. 73 860 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 29095159
DOI: 10.1107/S2059798317013791