Chlorine in PDB 5o0n: Deglycosylated Nogo Receptor with Native Disulfide Structure 4

The structure of Deglycosylated Nogo Receptor with Native Disulfide Structure 4, PDB code: 5o0n was solved by M.F.Pronker, R.P.Tas, H.C.Vlieg, B.J.C.Janssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	90.63 / 2.50
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	90.630, 90.630, 45.620, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 24.8

The binding sites of Chlorine atom in the Deglycosylated Nogo Receptor with Native Disulfide Structure 4 (pdb code 5o0n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Deglycosylated Nogo Receptor with Native Disulfide Structure 4, PDB code: 5o0n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Deglycosylated Nogo Receptor with Native Disulfide Structure 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Deglycosylated Nogo Receptor with Native Disulfide Structure 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl413 b:0.2 occ:1.00 N A:LYS334 3.7 93.3 1.0 CG A:LYS334 3.8 0.6 1.0 CD A:LYS334 3.8 0.1 1.0 CE A:LYS334 3.8 0.1 1.0 CA A:PRO333 4.0 83.3 1.0 CB A:PRO333 4.3 90.5 1.0 CB A:LYS334 4.4 98.1 1.0 C A:PRO333 4.4 91.0 1.0 NZ A:LYS334 4.4 0.2 1.0 CA A:LYS334 4.7 93.5 1.0

Chlorine binding site 2 out of 2 in the Deglycosylated Nogo Receptor with Native Disulfide Structure 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Deglycosylated Nogo Receptor with Native Disulfide Structure 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl414 b:0.8 occ:1.00 CG2 A:THR134 3.4 79.5 1.0 OH A:TYR160 3.5 88.3 1.0 CB A:THR134 4.2 74.5 1.0 CG A:TYR158 4.2 70.5 1.0 CD2 A:TYR158 4.3 69.1 1.0 CE2 A:TYR160 4.3 82.3 1.0 CZ A:TYR160 4.4 82.1 1.0 CB A:TYR158 4.5 68.8 1.0 CE1 A:HIS136 4.6 92.7 1.0 CD1 A:TYR158 4.7 69.0 1.0 CE2 A:TYR158 4.7 78.5 1.0 OG1 A:THR134 4.8 84.3 1.0 OE1 A:GLN109 4.8 91.5 1.0 NE2 A:HIS136 4.8 92.4 1.0

M.F.Pronker, R.P.Tas, H.C.Vlieg, B.J.C.Janssen. Nogo Receptor Crystal Structures with A Native Disulfide Pattern Suggest A Novel Mode of Self-Interaction. Acta Crystallogr D Struct V. 73 860 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 29095159
DOI: 10.1107/S2059798317013791