Chlorine in PDB 5o3z: Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
Enzymatic activity of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
All present enzymatic activity of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora:
1.1.1.140;
Protein crystallography data
The structure of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora, PDB code: 5o3z
was solved by
M.Salomone-Stagni,
J.D.Bartho,
D.Bellini,
M.A.Walsh,
S.Benini,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
113.51 /
1.84
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
120.707,
138.057,
199.442,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
20.9 /
25.5
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
(pdb code 5o3z). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the
Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora, PDB code: 5o3z:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 1 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:32.7
occ:1.00
|
OG1
|
A:THR253
|
3.1
|
18.3
|
1.0
|
|
N
|
A:THR253
|
3.1
|
21.6
|
1.0
|
|
N
|
A:GLY255
|
3.2
|
22.9
|
1.0
|
|
OE1
|
B:GLN248
|
3.3
|
20.3
|
1.0
|
|
N
|
A:GLY254
|
3.4
|
24.6
|
1.0
|
|
N
|
B:THR246
|
3.6
|
22.7
|
1.0
|
|
CA
|
A:THR253
|
3.7
|
20.8
|
1.0
|
|
CA
|
B:CYS245
|
3.7
|
24.5
|
1.0
|
|
C
|
A:THR253
|
3.8
|
22.2
|
1.0
|
|
O
|
B:TYR244
|
3.8
|
30.9
|
1.0
|
|
CA
|
A:GLY255
|
3.8
|
22.0
|
1.0
|
|
CB
|
A:THR253
|
3.9
|
19.7
|
1.0
|
|
CD
|
B:GLN248
|
4.0
|
20.7
|
1.0
|
|
O
|
B:THR246
|
4.0
|
23.1
|
1.0
|
|
O
|
A:ASN251
|
4.0
|
28.1
|
1.0
|
|
CB
|
A:ASN251
|
4.0
|
24.2
|
1.0
|
|
C
|
A:ASN251
|
4.2
|
25.1
|
1.0
|
|
C
|
B:CYS245
|
4.2
|
24.0
|
1.0
|
|
C
|
A:GLY254
|
4.2
|
23.7
|
1.0
|
|
CA
|
A:GLY254
|
4.2
|
24.0
|
1.0
|
|
C
|
A:VAL252
|
4.2
|
22.2
|
1.0
|
|
O
|
A:VAL257
|
4.2
|
20.4
|
1.0
|
|
N
|
A:VAL252
|
4.3
|
22.7
|
1.0
|
|
CA
|
A:VAL252
|
4.3
|
23.7
|
1.0
|
|
CB
|
B:CYS245
|
4.5
|
23.8
|
1.0
|
|
CG
|
B:GLN248
|
4.5
|
20.7
|
1.0
|
|
C
|
B:TYR244
|
4.6
|
25.8
|
1.0
|
|
O
|
A:THR253
|
4.6
|
25.1
|
1.0
|
|
CG2
|
A:THR253
|
4.6
|
18.1
|
1.0
|
|
N
|
B:CYS245
|
4.7
|
23.4
|
1.0
|
|
C
|
A:GLY255
|
4.7
|
22.9
|
1.0
|
|
CA
|
B:THR246
|
4.8
|
22.9
|
1.0
|
|
C
|
B:THR246
|
4.8
|
23.4
|
1.0
|
|
CA
|
A:ASN251
|
4.8
|
22.6
|
1.0
|
|
NE2
|
B:GLN248
|
4.8
|
18.9
|
1.0
|
|
N
|
A:GLN256
|
4.9
|
22.8
|
1.0
|
|
SG
|
B:CYS245
|
5.0
|
27.6
|
1.0
|
|
Chlorine binding site 2 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 2 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:34.4
occ:1.00
|
OG1
|
B:THR253
|
3.1
|
20.0
|
1.0
|
|
NE2
|
A:GLN248
|
3.2
|
18.8
|
1.0
|
|
N
|
B:THR253
|
3.2
|
23.0
|
1.0
|
|
N
|
B:GLY255
|
3.3
|
29.1
|
1.0
|
|
N
|
A:THR246
|
3.5
|
23.1
|
1.0
|
|
N
|
B:GLY254
|
3.5
|
27.6
|
1.0
|
|
CA
|
A:CYS245
|
3.7
|
25.1
|
1.0
|
|
O
|
A:TYR244
|
3.8
|
25.9
|
1.0
|
|
O
|
A:THR246
|
3.8
|
22.5
|
1.0
|
|
CD
|
A:GLN248
|
3.9
|
18.9
|
1.0
|
|
CA
|
B:THR253
|
3.9
|
25.9
|
1.0
|
|
CA
|
B:GLY255
|
3.9
|
28.2
|
1.0
|
|
C
|
B:THR253
|
4.0
|
24.2
|
1.0
|
|
O
|
B:ASN251
|
4.0
|
24.0
|
1.0
|
|
CB
|
B:ASN251
|
4.0
|
23.2
|
1.0
|
|
CB
|
B:THR253
|
4.1
|
23.4
|
1.0
|
|
C
|
B:ASN251
|
4.1
|
25.1
|
1.0
|
|
C
|
A:CYS245
|
4.1
|
24.7
|
1.0
|
|
O
|
B:VAL257
|
4.2
|
24.8
|
1.0
|
|
C
|
B:VAL252
|
4.3
|
24.5
|
1.0
|
|
C
|
B:GLY254
|
4.3
|
27.9
|
1.0
|
|
N
|
B:VAL252
|
4.3
|
23.1
|
1.0
|
|
CG
|
A:GLN248
|
4.3
|
19.2
|
1.0
|
|
CA
|
B:GLY254
|
4.3
|
28.0
|
1.0
|
|
CA
|
B:VAL252
|
4.3
|
25.9
|
1.0
|
|
CB
|
A:CYS245
|
4.4
|
23.7
|
1.0
|
|
C
|
A:TYR244
|
4.6
|
26.1
|
1.0
|
|
C
|
A:THR246
|
4.6
|
22.5
|
1.0
|
|
CA
|
A:THR246
|
4.6
|
22.5
|
1.0
|
|
N
|
A:CYS245
|
4.7
|
23.2
|
1.0
|
|
OE1
|
A:GLN248
|
4.7
|
21.0
|
1.0
|
|
CA
|
B:ASN251
|
4.7
|
24.2
|
1.0
|
|
SG
|
A:CYS245
|
4.8
|
27.8
|
1.0
|
|
CG2
|
B:THR253
|
4.8
|
22.9
|
1.0
|
|
C
|
B:GLY255
|
4.8
|
26.9
|
1.0
|
|
O
|
B:THR253
|
4.9
|
28.1
|
1.0
|
|
N
|
B:GLN256
|
5.0
|
26.2
|
1.0
|
|
Chlorine binding site 3 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 3 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:22.6
occ:1.00
|
OG1
|
C:THR253
|
3.1
|
18.9
|
1.0
|
|
N
|
C:GLY255
|
3.1
|
18.9
|
1.0
|
|
N
|
C:THR253
|
3.2
|
16.6
|
1.0
|
|
NE2
|
D:GLN248
|
3.2
|
15.6
|
1.0
|
|
N
|
C:GLY254
|
3.5
|
17.8
|
1.0
|
|
O
|
D:TYR244
|
3.7
|
25.3
|
1.0
|
|
N
|
D:THR246
|
3.7
|
16.4
|
1.0
|
|
CA
|
C:THR253
|
3.8
|
17.8
|
1.0
|
|
CA
|
D:CYS245
|
3.8
|
18.6
|
1.0
|
|
CA
|
C:GLY255
|
3.8
|
20.0
|
1.0
|
|
C
|
C:THR253
|
3.9
|
17.3
|
1.0
|
|
O
|
D:THR246
|
3.9
|
17.9
|
1.0
|
|
O
|
C:ASN251
|
3.9
|
16.4
|
1.0
|
|
CB
|
C:THR253
|
4.0
|
17.6
|
1.0
|
|
CD
|
D:GLN248
|
4.0
|
15.7
|
1.0
|
|
CB
|
C:ASN251
|
4.1
|
17.6
|
1.0
|
|
C
|
C:ASN251
|
4.1
|
16.9
|
1.0
|
|
O
|
C:VAL257
|
4.1
|
16.4
|
1.0
|
|
C
|
C:GLY254
|
4.1
|
19.8
|
1.0
|
|
C
|
C:VAL252
|
4.2
|
16.6
|
1.0
|
|
CA
|
C:GLY254
|
4.3
|
19.2
|
1.0
|
|
C
|
D:CYS245
|
4.3
|
17.1
|
1.0
|
|
N
|
C:VAL252
|
4.3
|
16.8
|
1.0
|
|
CA
|
C:VAL252
|
4.4
|
16.5
|
1.0
|
|
CG
|
D:GLN248
|
4.5
|
15.5
|
1.0
|
|
CB
|
D:CYS245
|
4.5
|
19.2
|
1.0
|
|
C
|
D:TYR244
|
4.5
|
21.8
|
1.0
|
|
N
|
D:CYS245
|
4.6
|
19.4
|
1.0
|
|
CG2
|
C:THR253
|
4.6
|
17.9
|
1.0
|
|
C
|
C:GLY255
|
4.6
|
20.1
|
1.0
|
|
O
|
C:THR253
|
4.7
|
15.6
|
1.0
|
|
C
|
D:THR246
|
4.7
|
17.6
|
1.0
|
|
CA
|
C:ASN251
|
4.8
|
17.0
|
1.0
|
|
CA
|
D:THR246
|
4.8
|
16.9
|
1.0
|
|
OE1
|
D:GLN248
|
4.8
|
14.7
|
1.0
|
|
N
|
C:GLN256
|
4.8
|
19.3
|
1.0
|
|
SG
|
D:CYS245
|
4.9
|
20.7
|
1.0
|
|
Chlorine binding site 4 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 4 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:25.1
occ:1.00
|
OG1
|
D:THR253
|
3.1
|
19.4
|
1.0
|
|
N
|
D:THR253
|
3.2
|
17.4
|
1.0
|
|
N
|
D:GLY255
|
3.2
|
17.8
|
1.0
|
|
NE2
|
C:GLN248
|
3.2
|
15.7
|
1.0
|
|
N
|
D:GLY254
|
3.5
|
17.8
|
1.0
|
|
N
|
C:THR246
|
3.6
|
16.4
|
1.0
|
|
CA
|
C:CYS245
|
3.7
|
17.5
|
1.0
|
|
O
|
C:TYR244
|
3.8
|
22.9
|
1.0
|
|
CA
|
D:THR253
|
3.8
|
19.3
|
1.0
|
|
CA
|
D:GLY255
|
3.8
|
19.2
|
1.0
|
|
C
|
D:THR253
|
3.9
|
18.0
|
1.0
|
|
O
|
C:THR246
|
3.9
|
15.8
|
1.0
|
|
O
|
D:ASN251
|
3.9
|
14.4
|
1.0
|
|
CB
|
D:THR253
|
4.0
|
20.0
|
1.0
|
|
CD
|
C:GLN248
|
4.0
|
16.9
|
1.0
|
|
CB
|
D:ASN251
|
4.0
|
16.9
|
1.0
|
|
C
|
C:CYS245
|
4.1
|
16.7
|
1.0
|
|
C
|
D:ASN251
|
4.2
|
16.2
|
1.0
|
|
O
|
D:VAL257
|
4.2
|
18.5
|
1.0
|
|
C
|
D:GLY254
|
4.2
|
19.1
|
1.0
|
|
C
|
D:VAL252
|
4.3
|
18.0
|
1.0
|
|
CA
|
D:GLY254
|
4.3
|
18.5
|
1.0
|
|
CA
|
D:VAL252
|
4.4
|
17.0
|
1.0
|
|
N
|
D:VAL252
|
4.4
|
16.3
|
1.0
|
|
CG
|
C:GLN248
|
4.4
|
16.1
|
1.0
|
|
CB
|
C:CYS245
|
4.5
|
17.7
|
1.0
|
|
C
|
C:TYR244
|
4.6
|
20.7
|
1.0
|
|
CG2
|
D:THR253
|
4.7
|
20.9
|
1.0
|
|
N
|
C:CYS245
|
4.7
|
18.1
|
1.0
|
|
O
|
D:THR253
|
4.7
|
19.2
|
1.0
|
|
CA
|
C:THR246
|
4.7
|
16.8
|
1.0
|
|
C
|
D:GLY255
|
4.7
|
19.4
|
1.0
|
|
C
|
C:THR246
|
4.7
|
16.5
|
1.0
|
|
CA
|
D:ASN251
|
4.8
|
16.1
|
1.0
|
|
OE1
|
C:GLN248
|
4.9
|
17.8
|
1.0
|
|
N
|
D:GLN256
|
4.9
|
17.2
|
1.0
|
|
SG
|
C:CYS245
|
5.0
|
19.8
|
1.0
|
|
Chlorine binding site 5 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 5 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl301
b:21.8
occ:1.00
|
OG1
|
E:THR253
|
3.1
|
15.5
|
1.0
|
|
NE2
|
F:GLN248
|
3.2
|
14.2
|
1.0
|
|
N
|
E:GLY255
|
3.2
|
15.4
|
1.0
|
|
N
|
E:THR253
|
3.3
|
15.0
|
1.0
|
|
N
|
E:GLY254
|
3.5
|
14.4
|
1.0
|
|
N
|
F:THR246
|
3.7
|
15.5
|
1.0
|
|
O
|
F:TYR244
|
3.7
|
18.4
|
1.0
|
|
CA
|
F:CYS245
|
3.7
|
17.4
|
1.0
|
|
C
|
E:THR253
|
3.8
|
14.8
|
1.0
|
|
CA
|
E:GLY255
|
3.8
|
15.8
|
1.0
|
|
O
|
F:THR246
|
3.8
|
13.7
|
1.0
|
|
CA
|
E:THR253
|
3.9
|
15.6
|
1.0
|
|
CD
|
F:GLN248
|
3.9
|
14.6
|
1.0
|
|
CB
|
E:THR253
|
4.0
|
16.0
|
1.0
|
|
O
|
E:ASN251
|
4.1
|
15.3
|
1.0
|
|
CB
|
E:ASN251
|
4.1
|
15.3
|
1.0
|
|
C
|
E:ASN251
|
4.2
|
16.2
|
1.0
|
|
O
|
E:VAL257
|
4.2
|
15.8
|
1.0
|
|
C
|
E:GLY254
|
4.2
|
14.9
|
1.0
|
|
C
|
F:CYS245
|
4.2
|
16.5
|
1.0
|
|
C
|
E:VAL252
|
4.3
|
15.3
|
1.0
|
|
CA
|
E:GLY254
|
4.3
|
15.2
|
1.0
|
|
N
|
E:VAL252
|
4.3
|
15.8
|
1.0
|
|
CG
|
F:GLN248
|
4.4
|
14.3
|
1.0
|
|
CA
|
E:VAL252
|
4.4
|
16.0
|
1.0
|
|
CB
|
F:CYS245
|
4.4
|
18.3
|
1.0
|
|
C
|
F:TYR244
|
4.6
|
17.1
|
1.0
|
|
O
|
E:THR253
|
4.6
|
14.0
|
1.0
|
|
C
|
F:THR246
|
4.7
|
14.5
|
1.0
|
|
C
|
E:GLY255
|
4.7
|
16.6
|
1.0
|
|
CA
|
F:THR246
|
4.7
|
14.2
|
1.0
|
|
OE1
|
F:GLN248
|
4.7
|
15.8
|
1.0
|
|
N
|
F:CYS245
|
4.7
|
16.9
|
1.0
|
|
CG2
|
E:THR253
|
4.7
|
15.9
|
1.0
|
|
CA
|
E:ASN251
|
4.8
|
16.0
|
1.0
|
|
N
|
E:GLN256
|
4.9
|
16.4
|
1.0
|
|
SG
|
F:CYS245
|
4.9
|
20.0
|
1.0
|
|
Chlorine binding site 6 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 6 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl301
b:24.4
occ:1.00
|
OG1
|
F:THR253
|
3.1
|
14.8
|
1.0
|
|
N
|
F:GLY255
|
3.2
|
18.9
|
1.0
|
|
N
|
F:THR253
|
3.2
|
16.0
|
1.0
|
|
NE2
|
E:GLN248
|
3.3
|
16.5
|
1.0
|
|
N
|
F:GLY254
|
3.4
|
17.4
|
1.0
|
|
N
|
E:THR246
|
3.6
|
16.1
|
1.0
|
|
CA
|
E:CYS245
|
3.7
|
17.1
|
1.0
|
|
O
|
E:TYR244
|
3.8
|
18.5
|
1.0
|
|
CA
|
F:THR253
|
3.8
|
15.6
|
1.0
|
|
C
|
F:THR253
|
3.8
|
16.5
|
1.0
|
|
CA
|
F:GLY255
|
3.9
|
18.4
|
1.0
|
|
CD
|
E:GLN248
|
3.9
|
17.6
|
1.0
|
|
CB
|
F:THR253
|
3.9
|
15.4
|
1.0
|
|
O
|
F:ASN251
|
4.0
|
15.3
|
1.0
|
|
O
|
E:THR246
|
4.0
|
16.7
|
1.0
|
|
CB
|
F:ASN251
|
4.0
|
15.3
|
1.0
|
|
C
|
F:ASN251
|
4.1
|
15.2
|
1.0
|
|
C
|
E:CYS245
|
4.1
|
16.2
|
1.0
|
|
C
|
F:GLY254
|
4.2
|
19.6
|
1.0
|
|
O
|
F:VAL257
|
4.2
|
17.4
|
1.0
|
|
CA
|
F:GLY254
|
4.3
|
18.5
|
1.0
|
|
C
|
F:VAL252
|
4.3
|
16.1
|
1.0
|
|
N
|
F:VAL252
|
4.3
|
15.5
|
1.0
|
|
CB
|
E:CYS245
|
4.3
|
17.2
|
1.0
|
|
CG
|
E:GLN248
|
4.4
|
17.4
|
1.0
|
|
CA
|
F:VAL252
|
4.4
|
16.1
|
1.0
|
|
C
|
E:TYR244
|
4.6
|
17.1
|
1.0
|
|
CG2
|
F:THR253
|
4.7
|
16.2
|
1.0
|
|
N
|
E:CYS245
|
4.7
|
17.1
|
1.0
|
|
O
|
F:THR253
|
4.7
|
15.7
|
1.0
|
|
OE1
|
E:GLN248
|
4.7
|
17.2
|
1.0
|
|
CA
|
F:ASN251
|
4.8
|
15.2
|
1.0
|
|
CA
|
E:THR246
|
4.8
|
15.8
|
1.0
|
|
C
|
E:THR246
|
4.8
|
15.7
|
1.0
|
|
C
|
F:GLY255
|
4.8
|
18.7
|
1.0
|
|
SG
|
E:CYS245
|
4.9
|
19.1
|
1.0
|
|
N
|
F:GLN256
|
4.9
|
18.2
|
1.0
|
|
Chlorine binding site 7 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 7 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl301
b:26.6
occ:1.00
|
OG1
|
G:THR253
|
3.1
|
18.0
|
1.0
|
|
N
|
G:GLY255
|
3.3
|
17.5
|
1.0
|
|
NE2
|
H:GLN248
|
3.3
|
15.8
|
1.0
|
|
N
|
G:THR253
|
3.3
|
17.2
|
1.0
|
|
N
|
G:GLY254
|
3.6
|
18.2
|
1.0
|
|
N
|
H:THR246
|
3.6
|
16.5
|
1.0
|
|
CA
|
H:CYS245
|
3.7
|
19.2
|
1.0
|
|
O
|
H:TYR244
|
3.8
|
22.1
|
1.0
|
|
O
|
G:ASN251
|
3.8
|
16.4
|
1.0
|
|
CD
|
H:GLN248
|
3.9
|
17.0
|
1.0
|
|
CA
|
G:GLY255
|
3.9
|
17.6
|
1.0
|
|
CA
|
G:THR253
|
3.9
|
17.2
|
1.0
|
|
O
|
H:THR246
|
3.9
|
16.0
|
1.0
|
|
CB
|
G:ASN251
|
4.0
|
17.4
|
1.0
|
|
C
|
G:THR253
|
4.0
|
17.0
|
1.0
|
|
C
|
G:ASN251
|
4.0
|
16.7
|
1.0
|
|
CB
|
G:THR253
|
4.0
|
17.0
|
1.0
|
|
C
|
H:CYS245
|
4.1
|
18.1
|
1.0
|
|
O
|
G:VAL257
|
4.2
|
17.4
|
1.0
|
|
C
|
G:GLY254
|
4.3
|
18.9
|
1.0
|
|
CA
|
G:GLY254
|
4.3
|
18.3
|
1.0
|
|
CB
|
H:CYS245
|
4.3
|
19.8
|
1.0
|
|
CG
|
H:GLN248
|
4.3
|
16.4
|
1.0
|
|
N
|
G:VAL252
|
4.3
|
18.6
|
1.0
|
|
C
|
G:VAL252
|
4.3
|
18.3
|
1.0
|
|
CA
|
G:VAL252
|
4.4
|
18.6
|
1.0
|
|
OE1
|
H:GLN248
|
4.6
|
16.9
|
1.0
|
|
CA
|
G:ASN251
|
4.7
|
17.0
|
1.0
|
|
C
|
H:TYR244
|
4.7
|
20.1
|
1.0
|
|
CA
|
H:THR246
|
4.7
|
16.7
|
1.0
|
|
N
|
H:CYS245
|
4.7
|
18.8
|
1.0
|
|
C
|
H:THR246
|
4.7
|
15.6
|
1.0
|
|
CG2
|
G:THR253
|
4.8
|
16.6
|
1.0
|
|
C
|
G:GLY255
|
4.8
|
17.1
|
1.0
|
|
O
|
G:THR253
|
4.9
|
17.8
|
1.0
|
|
SG
|
H:CYS245
|
4.9
|
22.0
|
1.0
|
|
Chlorine binding site 8 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 8 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl301
b:23.4
occ:1.00
|
OG1
|
H:THR253
|
3.0
|
14.6
|
1.0
|
|
N
|
H:GLY255
|
3.2
|
15.1
|
1.0
|
|
N
|
H:THR253
|
3.2
|
16.4
|
1.0
|
|
NE2
|
G:GLN248
|
3.4
|
15.2
|
1.0
|
|
N
|
H:GLY254
|
3.5
|
15.8
|
1.0
|
|
N
|
G:THR246
|
3.6
|
16.6
|
1.0
|
|
CA
|
G:CYS245
|
3.7
|
17.5
|
1.0
|
|
O
|
G:TYR244
|
3.8
|
19.1
|
1.0
|
|
CA
|
H:GLY255
|
3.8
|
15.0
|
1.0
|
|
CA
|
H:THR253
|
3.8
|
15.9
|
1.0
|
|
C
|
H:THR253
|
3.9
|
16.4
|
1.0
|
|
O
|
H:ASN251
|
3.9
|
17.5
|
1.0
|
|
O
|
G:THR246
|
3.9
|
15.6
|
1.0
|
|
CD
|
G:GLN248
|
3.9
|
15.6
|
1.0
|
|
CB
|
H:THR253
|
3.9
|
15.4
|
1.0
|
|
CB
|
H:ASN251
|
4.0
|
18.7
|
1.0
|
|
C
|
H:ASN251
|
4.0
|
18.2
|
1.0
|
|
O
|
H:VAL257
|
4.1
|
15.6
|
1.0
|
|
C
|
G:CYS245
|
4.2
|
17.6
|
1.0
|
|
N
|
H:VAL252
|
4.2
|
16.8
|
1.0
|
|
C
|
H:GLY254
|
4.3
|
15.3
|
1.0
|
|
C
|
H:VAL252
|
4.3
|
16.8
|
1.0
|
|
CG
|
G:GLN248
|
4.3
|
15.3
|
1.0
|
|
CB
|
G:CYS245
|
4.3
|
18.6
|
1.0
|
|
CA
|
H:VAL252
|
4.4
|
17.2
|
1.0
|
|
CA
|
H:GLY254
|
4.4
|
15.8
|
1.0
|
|
CG2
|
H:THR253
|
4.6
|
14.8
|
1.0
|
|
C
|
H:GLY255
|
4.6
|
14.6
|
1.0
|
|
C
|
G:TYR244
|
4.7
|
18.5
|
1.0
|
|
CA
|
H:ASN251
|
4.7
|
18.1
|
1.0
|
|
N
|
G:CYS245
|
4.7
|
16.6
|
1.0
|
|
OE1
|
G:GLN248
|
4.7
|
16.9
|
1.0
|
|
O
|
H:THR253
|
4.7
|
15.5
|
1.0
|
|
CA
|
G:THR246
|
4.7
|
16.1
|
1.0
|
|
C
|
G:THR246
|
4.7
|
15.4
|
1.0
|
|
N
|
H:GLN256
|
4.8
|
15.2
|
1.0
|
|
SG
|
G:CYS245
|
4.9
|
19.6
|
1.0
|
|
Chlorine binding site 9 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 9 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl301
b:26.2
occ:1.00
|
OG1
|
I:THR253
|
3.0
|
18.1
|
1.0
|
|
N
|
I:THR253
|
3.2
|
17.9
|
1.0
|
|
NE2
|
J:GLN248
|
3.3
|
18.1
|
1.0
|
|
N
|
I:GLY255
|
3.3
|
18.7
|
1.0
|
|
N
|
I:GLY254
|
3.5
|
19.2
|
1.0
|
|
CA
|
J:CYS245
|
3.7
|
20.0
|
1.0
|
|
N
|
J:THR246
|
3.7
|
19.2
|
1.0
|
|
O
|
J:TYR244
|
3.7
|
24.1
|
1.0
|
|
CA
|
I:THR253
|
3.7
|
18.0
|
1.0
|
|
C
|
I:THR253
|
3.8
|
18.6
|
1.0
|
|
O
|
I:ASN251
|
3.8
|
19.1
|
1.0
|
|
CB
|
I:THR253
|
3.9
|
18.1
|
1.0
|
|
CA
|
I:GLY255
|
3.9
|
19.7
|
1.0
|
|
O
|
J:THR246
|
4.0
|
18.2
|
1.0
|
|
CD
|
J:GLN248
|
4.0
|
19.2
|
1.0
|
|
C
|
I:ASN251
|
4.1
|
18.8
|
1.0
|
|
CB
|
I:ASN251
|
4.1
|
18.6
|
1.0
|
|
O
|
I:VAL257
|
4.2
|
21.9
|
1.0
|
|
C
|
J:CYS245
|
4.2
|
19.5
|
1.0
|
|
C
|
I:VAL252
|
4.3
|
18.5
|
1.0
|
|
C
|
I:GLY254
|
4.3
|
19.4
|
1.0
|
|
N
|
I:VAL252
|
4.3
|
18.8
|
1.0
|
|
CA
|
I:GLY254
|
4.4
|
20.4
|
1.0
|
|
CG
|
J:GLN248
|
4.4
|
18.7
|
1.0
|
|
CA
|
I:VAL252
|
4.4
|
19.1
|
1.0
|
|
CB
|
J:CYS245
|
4.5
|
19.1
|
1.0
|
|
C
|
J:TYR244
|
4.6
|
21.2
|
1.0
|
|
CG2
|
I:THR253
|
4.6
|
17.7
|
1.0
|
|
N
|
J:CYS245
|
4.6
|
18.8
|
1.0
|
|
O
|
I:THR253
|
4.7
|
18.7
|
1.0
|
|
CA
|
I:ASN251
|
4.8
|
17.7
|
1.0
|
|
C
|
J:THR246
|
4.8
|
18.2
|
1.0
|
|
C
|
I:GLY255
|
4.8
|
20.8
|
1.0
|
|
CA
|
J:THR246
|
4.8
|
18.8
|
1.0
|
|
OE1
|
J:GLN248
|
4.8
|
19.4
|
1.0
|
|
SG
|
J:CYS245
|
4.9
|
21.1
|
1.0
|
|
N
|
I:GLN256
|
4.9
|
22.4
|
1.0
|
|
Chlorine binding site 10 out
of 12 in 5o3z
Go back to
Chlorine Binding Sites List in 5o3z
Chlorine binding site 10 out
of 12 in the Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Sorbitol-6-Phosphate 2-Dehydrogenase Srld From Erwinia Amylovora within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl301
b:31.3
occ:1.00
|
OG1
|
J:THR253
|
3.1
|
23.3
|
1.0
|
|
N
|
J:GLY255
|
3.2
|
24.2
|
1.0
|
|
N
|
J:THR253
|
3.2
|
21.2
|
1.0
|
|
NE2
|
I:GLN248
|
3.3
|
21.3
|
1.0
|
|
N
|
J:GLY254
|
3.5
|
22.9
|
1.0
|
|
CA
|
I:CYS245
|
3.6
|
22.2
|
1.0
|
|
N
|
I:THR246
|
3.6
|
23.9
|
1.0
|
|
CA
|
J:GLY255
|
3.8
|
26.9
|
1.0
|
|
O
|
I:TYR244
|
3.8
|
24.4
|
1.0
|
|
CA
|
J:THR253
|
3.8
|
21.6
|
1.0
|
|
C
|
J:THR253
|
3.9
|
22.6
|
1.0
|
|
O
|
J:ASN251
|
3.9
|
20.8
|
1.0
|
|
O
|
I:THR246
|
3.9
|
19.0
|
1.0
|
|
CD
|
I:GLN248
|
4.0
|
21.9
|
1.0
|
|
CB
|
J:THR253
|
4.0
|
20.7
|
1.0
|
|
CB
|
J:ASN251
|
4.0
|
23.4
|
1.0
|
|
C
|
J:ASN251
|
4.1
|
21.5
|
1.0
|
|
O
|
J:VAL257
|
4.1
|
22.8
|
1.0
|
|
C
|
I:CYS245
|
4.1
|
21.2
|
1.0
|
|
C
|
J:GLY254
|
4.2
|
24.2
|
1.0
|
|
C
|
J:VAL252
|
4.2
|
22.1
|
1.0
|
|
CB
|
I:CYS245
|
4.3
|
22.1
|
1.0
|
|
CG
|
I:GLN248
|
4.3
|
23.6
|
1.0
|
|
CA
|
J:GLY254
|
4.3
|
24.2
|
1.0
|
|
N
|
J:VAL252
|
4.3
|
20.0
|
1.0
|
|
CA
|
J:VAL252
|
4.3
|
21.2
|
1.0
|
|
CG2
|
J:THR253
|
4.6
|
21.9
|
1.0
|
|
N
|
I:CYS245
|
4.6
|
22.0
|
1.0
|
|
C
|
I:TYR244
|
4.6
|
23.4
|
1.0
|
|
C
|
J:GLY255
|
4.7
|
27.7
|
1.0
|
|
O
|
J:THR253
|
4.7
|
21.9
|
1.0
|
|
CA
|
J:ASN251
|
4.7
|
21.5
|
1.0
|
|
C
|
I:THR246
|
4.7
|
19.6
|
1.0
|
|
CA
|
I:THR246
|
4.8
|
21.1
|
1.0
|
|
SG
|
I:CYS245
|
4.8
|
25.0
|
1.0
|
|
OE1
|
I:GLN248
|
4.8
|
23.9
|
1.0
|
|
N
|
J:GLN256
|
4.9
|
25.0
|
1.0
|
|
Reference:
M.Salomone-Stagni,
J.D.Bartho,
E.Kalita,
M.Rejzek,
R.A.Field,
D.Bellini,
M.A.Walsh,
S.Benini.
Structural and Functional Analysis of Erwinia Amylovora Srld. the First Crystal Structure of A Sorbitol-6-Phosphate 2-Dehydrogenase. J.Struct.Biol. V. 203 109 2018.
ISSN: ESSN 1095-8657
PubMed: 29605571
DOI: 10.1016/J.JSB.2018.03.010
Page generated: Fri Jul 26 14:06:06 2024
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