Atomistry » Chlorine » PDB 5o5t-5oeh » 5o8n
Atomistry »
  Chlorine »
    PDB 5o5t-5oeh »
      5o8n »

Chlorine in PDB 5o8n: Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

Enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.

All present enzymatic activity of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.:
3.4.24.27;

Protein crystallography data

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n was solved by D.N.Axford, C.Burton, P.Docker, M.Prince, P.D.Topham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.552, 93.552, 129.753, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.9

Other elements in 5o8n:

The structure of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Calcium (Ca) 4 atoms
Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. (pdb code 5o8n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation., PDB code: 5o8n:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 1 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:54.3
occ:1.00
 ZN A:ZN403 2.3 37.4 1.0
O A:HOH602 2.4 30.0 1.0
CL A:CL406 3.4 77.1 1.0
OE1 A:GLU166 3.4 39.1 1.0
NE2 A:HIS231 3.4 45.8 1.0
NE2 A:HIS146 3.6 39.2 1.0
CE1 A:HIS142 3.6 34.5 1.0
OH A:TYR157 3.6 54.2 1.0
O A:HOH581 3.7 46.6 1.0
O A:HOH587 3.9 30.0 1.0
OE2 A:GLU143 4.0 41.5 1.0
OE1 A:GLU143 4.0 41.9 1.0
CE1 A:HIS231 4.1 47.3 1.0
CD A:GLU166 4.2 38.0 1.0
CD2 A:HIS146 4.2 36.9 1.0
OE2 A:GLU166 4.3 43.7 1.0
CD A:GLU143 4.4 40.8 1.0
ND1 A:HIS142 4.4 42.2 1.0
CE1 A:HIS146 4.5 40.4 1.0
NE2 A:HIS142 4.6 38.8 1.0
CD2 A:HIS231 4.6 36.6 1.0
O A:ALA113 4.6 34.9 1.0
CZ A:TYR157 4.8 57.0 1.0

Chlorine binding site 2 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 2 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:61.2
occ:1.00
 CD1 A:TYR66 3.9 42.4 1.0
CG A:TYR66 4.0 47.3 1.0
CE1 A:TYR66 4.1 45.3 1.0
CD2 A:TYR66 4.2 43.2 1.0
CZ A:TYR66 4.3 50.8 1.0
CE2 A:TYR66 4.3 38.8 1.0
CB A:TYR66 4.6 38.5 1.0

Chlorine binding site 3 out of 3 in 5o8n

Go back to Chlorine Binding Sites List in 5o8n
Chlorine binding site 3 out of 3 in the Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Thermolysin at Room Temperature Via A Method of Acoustically Induced Rotation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:77.1
occ:1.00
 O A:HOH602 2.6 30.0 1.0
CL A:CL404 3.4 54.3 1.0
OH A:TYR157 3.8 54.2 1.0
CZ A:TYR157 4.1 57.0 1.0
CB A:PHE114 4.1 30.1 1.0
O A:TRP115 4.4 36.4 1.0
CE2 A:TYR157 4.5 52.9 1.0
NE2 A:HIS146 4.5 39.2 1.0
CE1 A:TYR157 4.6 56.2 1.0
N A:TRP115 4.6 39.5 1.0
CD2 A:HIS146 4.6 36.9 1.0
CA A:PHE114 4.7 35.0 1.0
ZN A:ZN403 4.7 37.4 1.0
OE1 A:GLU143 4.9 41.9 1.0

Reference:

C.G.Burton, D.Axford, A.M.J.Edwards, R.J.Gildea, R.H.Morris, M.I.Newton, A.M.Orville, M.Prince, P.D.Topham, P.T.Docker. An Acoustic on-Chip Goniometer For Room Temperature Macromolecular Crystallography. Lab Chip V. 17 4225 2017.
ISSN: ISSN 1473-0189
PubMed: 29124258
DOI: 10.1039/C7LC00812K
Page generated: Fri Jul 26 14:19:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy