Atomistry » Chlorine » PDB 5o5r-5oeg » 5o9t
Atomistry »
  Chlorine »
    PDB 5o5r-5oeg »
      5o9t »

Chlorine in PDB 5o9t: HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide

Enzymatic activity of HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide

All present enzymatic activity of HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide:
2.3.1.97;

Protein crystallography data

The structure of HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide, PDB code: 5o9t was solved by C.Dian, T.Meinnel, C.Giglione, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.75 / 2.15
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.221, 79.641, 178.991, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide (pdb code 5o9t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide, PDB code: 5o9t:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5o9t

Go back to Chlorine Binding Sites List in 5o9t
Chlorine binding site 1 out of 2 in the HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:42.9
occ:1.00
N A:LEU163 3.1 32.1 1.0
CZ3 A:TRP206 3.1 23.7 1.0
NH2 A:ARG202 3.2 34.2 1.0
ND1 A:HIS211 3.2 22.6 1.0
NE A:ARG202 3.3 35.5 1.0
CE1 A:HIS211 3.4 22.3 1.0
CH2 A:TRP206 3.6 29.3 1.0
O A:LEU161 3.6 26.6 1.0
CZ A:ARG202 3.7 33.3 1.0
CA A:ASP162 3.8 36.9 1.0
CB A:LEU163 3.9 27.3 1.0
C A:ASP162 3.9 33.8 1.0
CE3 A:TRP206 3.9 21.2 1.0
CA A:LEU163 4.0 31.4 1.0
CG A:LEU163 4.0 29.0 1.0
OD1 A:ASP162 4.1 33.9 1.0
N A:GLY164 4.3 31.7 1.0
CD A:ARG202 4.5 28.0 1.0
C A:LEU161 4.5 31.6 1.0
CG A:HIS211 4.6 22.2 1.0
CG A:ARG202 4.6 23.5 1.0
C A:LEU163 4.6 31.0 1.0
CZ2 A:TRP206 4.6 29.4 1.0
CD1 A:LEU163 4.6 27.7 1.0
N A:ASP162 4.7 29.5 1.0
CA A:PRO208 4.7 25.5 1.0
NE2 A:HIS211 4.8 23.5 1.0
CB A:PRO208 4.8 25.6 1.0
CB A:ASP162 4.8 32.8 1.0
CD2 A:TRP206 4.9 16.5 1.0
CG A:ASP162 4.9 39.0 1.0
O A:HOH606 5.0 41.7 1.0

Chlorine binding site 2 out of 2 in 5o9t

Go back to Chlorine Binding Sites List in 5o9t
Chlorine binding site 2 out of 2 in the HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of HSNMT1 in Complex with Coa and Acetylated-Ncfskpk Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl504

b:36.2
occ:1.00
CZ3 B:TRP206 3.0 30.1 1.0
NH2 B:ARG202 3.0 28.5 1.0
NE B:ARG202 3.1 28.1 1.0
ND1 B:HIS211 3.2 20.5 1.0
CE1 B:HIS211 3.3 19.6 1.0
N B:LEU163 3.3 23.9 1.0
CZ B:ARG202 3.5 31.9 1.0
CH2 B:TRP206 3.5 34.9 1.0
CE3 B:TRP206 3.7 25.3 1.0
OD2 B:ASP162 3.8 35.4 1.0
O B:LEU161 3.8 22.4 1.0
CA B:ASP162 3.9 22.5 1.0
CG B:LEU163 4.0 27.2 1.0
C B:ASP162 4.0 21.1 1.0
CB B:LEU163 4.1 24.7 1.0
CA B:LEU163 4.2 29.0 1.0
CD B:ARG202 4.3 25.5 1.0
CA B:PRO208 4.4 16.7 1.0
CG B:ARG202 4.5 25.0 1.0
CB B:PRO208 4.5 21.8 1.0
CG B:HIS211 4.5 22.3 1.0
CZ2 B:TRP206 4.5 27.9 1.0
N B:GLY164 4.5 26.6 1.0
NE2 B:HIS211 4.6 18.8 1.0
CD2 B:TRP206 4.7 22.7 1.0
CG B:ASP162 4.7 39.9 1.0
CD1 B:LEU163 4.7 25.9 1.0
C B:LEU161 4.7 25.5 1.0
CB B:ASP162 4.8 33.1 1.0
N B:ASP162 4.8 27.2 1.0
NH1 B:ARG202 4.8 31.3 1.0
C B:LEU163 4.8 29.7 1.0
CE2 B:TRP206 5.0 25.8 1.0

Reference:

B.Castrec, C.Dian, S.Ciccone, C.L.Ebert, W.V.Bienvenut, J.P.Le Caer, J.M.Steyaert, C.Giglione, T.Meinnel. Structural and Genomic Decoding of Human and Plant Myristoylomes Reveals A Definitive Recognition Pattern. Nat. Chem. Biol. V. 14 671 2018.
ISSN: ESSN 1552-4469
PubMed: 29892081
DOI: 10.1038/S41589-018-0077-5
Page generated: Sat Dec 12 12:11:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy