Atomistry » Chlorine » PDB 5o5t-5oeh » 5oar
Atomistry »
  Chlorine »
    PDB 5o5t-5oeh »
      5oar »

Chlorine in PDB 5oar: Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae

Enzymatic activity of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae

All present enzymatic activity of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae:
3.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae, PDB code: 5oar was solved by J.Skerlova, P.Rezacova, J.Brynda, P.Pachl, Z.Otwinowski, O.Vanek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.37 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.752, 105.752, 285.807, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 24.1

Other elements in 5oar:

The structure of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae also contains other interesting chemical elements:

Bromine (Br) 12 atoms
Tantalum (Ta) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae (pdb code 5oar). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae, PDB code: 5oar:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 1 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl708

b:69.3
occ:1.00
 N B:ALA548 3.7 56.2 1.0
CB B:ALA548 3.8 57.1 1.0
CB B:ASP547 3.8 56.2 1.0
CA B:ALA548 4.4 57.9 1.0
CA B:ASP547 4.5 53.6 1.0
C B:ASP547 4.6 53.5 1.0
CG B:ASP547 4.7 57.1 1.0
OE1 B:GLU556 4.9 49.0 1.0

Chlorine binding site 2 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 2 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl709

b:42.8
occ:1.00
 OG B:SER179 3.5 34.5 1.0
NZ B:LYS177 3.8 58.5 1.0
CG B:LYS177 3.8 51.2 1.0
CB A:ARG28 3.9 41.5 1.0
C B:ASP178 4.1 36.5 1.0
N B:SER179 4.1 36.0 1.0
CG A:ARG28 4.1 42.4 1.0
N B:ASP178 4.2 39.1 1.0
CB B:SER179 4.2 35.8 1.0
CA B:ASP178 4.2 37.8 1.0
O B:LYS177 4.3 40.8 1.0
C B:LYS177 4.3 40.8 1.0
CE B:LYS177 4.3 57.8 1.0
NH1 A:ARG28 4.4 43.4 1.0
CZ A:ARG28 4.5 43.8 1.0
O B:ASP178 4.6 36.2 1.0
OE2 A:GLU29 4.6 61.3 1.0
CD B:LYS177 4.7 54.6 1.0
CA B:SER179 4.8 35.4 1.0
NH2 A:ARG28 4.8 44.4 1.0
NE A:ARG28 4.9 42.8 1.0
CB B:LYS177 4.9 47.1 1.0

Chlorine binding site 3 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 3 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl710

b:59.2
occ:1.00
 NE B:ARG432 3.2 63.7 1.0
CD B:ARG432 3.6 65.4 1.0
NZ B:LYS412 4.0 67.8 1.0
CZ B:ARG432 4.2 61.6 1.0
CE B:LYS412 4.3 66.7 1.0
NH2 B:ARG432 4.4 58.3 1.0
CB B:ARG432 4.7 60.4 1.0
CG B:ARG432 4.8 63.2 1.0

Chlorine binding site 4 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 4 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl711

b:47.7
occ:1.00
 NH1 B:ARG459 3.8 49.0 1.0
O B:GLY480 3.8 42.4 1.0
C B:GLY480 4.0 40.7 1.0
CA B:TRP482 4.0 39.6 1.0
N B:TRP482 4.0 38.9 1.0
OD1 B:ASN478 4.1 46.6 1.0
O B:HOH850 4.2 36.6 1.0
CA B:GLY480 4.3 40.7 1.0
CB B:TRP482 4.3 39.5 1.0
ND2 B:ASN478 4.3 44.0 1.0
C B:SER481 4.4 39.5 1.0
CG B:ASN478 4.5 44.6 1.0
N B:SER481 4.5 39.2 1.0
CE1 B:PHE473 4.8 44.2 1.0
CZ B:ARG459 4.8 50.0 1.0
O B:SER481 4.9 40.7 1.0
CA B:SER481 4.9 39.0 1.0
N B:GLY480 5.0 41.5 1.0

Chlorine binding site 5 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 5 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl712

b:62.4
occ:1.00
 CB B:ASP119 3.7 41.7 1.0
N B:ASP119 3.7 40.9 1.0
CA B:ASP119 4.3 40.3 1.0
O B:ASP119 4.7 38.0 1.0
CA B:ALA118 4.7 43.3 1.0
C B:ALA118 4.7 41.4 1.0
CG B:GLN121 4.8 37.4 1.0
C B:ASP119 4.8 39.2 1.0
CG B:ASP119 5.0 43.8 1.0
O B:GLU117 5.0 43.6 1.0

Chlorine binding site 6 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 6 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl713

b:76.0
occ:1.00
 NE B:ARG368 3.7 70.2 1.0
NH2 B:ARG368 3.8 67.6 1.0
CZ B:ARG368 4.2 68.7 1.0
CZ2 B:TRP361 4.2 67.5 1.0
CD B:ARG368 4.6 67.3 1.0
CG B:ARG368 4.6 69.1 1.0
CH2 B:TRP361 4.7 65.9 1.0
CB B:ASP372 4.8 64.5 1.0
CG B:ASP372 5.0 65.9 1.0

Chlorine binding site 7 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 7 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl714

b:54.8
occ:1.00
 N B:PHE473 3.4 50.2 1.0
CA B:PHE473 3.6 47.9 1.0
C B:ASN472 3.7 54.4 1.0
ND2 B:ASN478 3.7 44.0 1.0
N B:ASN478 3.9 42.5 1.0
CA B:ASN472 4.0 57.2 1.0
CG B:ASN478 4.1 44.6 1.0
CA B:GLY477 4.2 48.6 1.0
O B:ASN472 4.3 56.1 1.0
CB B:PHE473 4.4 46.5 1.0
OD1 B:ASN478 4.5 46.6 1.0
C B:GLY477 4.6 44.4 1.0
CG D:PRO471 4.7 69.8 1.0
O B:PRO471 4.7 60.5 1.0
CD1 B:PHE473 4.7 45.2 1.0
CB B:ASN478 4.8 44.1 1.0
C B:PHE473 4.8 47.0 1.0
N B:ASN472 4.9 58.9 1.0
CA B:ASN478 4.9 43.3 1.0

Chlorine binding site 8 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 8 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl707

b:37.6
occ:0.75
 CB D:ASP119 4.0 71.8 1.0
N D:ASP119 4.4 69.0 1.0
CG D:GLN121 4.6 62.0 1.0
CA D:ASP119 4.7 69.3 1.0
OD2 D:ASP119 4.8 74.2 1.0
CB D:GLN121 4.9 61.5 1.0
O D:ASP119 4.9 67.1 1.0
NE2 D:HIS338 5.0 69.1 1.0
CG D:ASP119 5.0 72.8 1.0

Chlorine binding site 9 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 9 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl708

b:52.9
occ:1.00
 O D:GLY480 3.8 45.8 1.0
NH1 D:ARG459 3.8 51.9 1.0
C D:GLY480 3.9 46.3 1.0
N D:TRP482 3.9 49.5 1.0
CA D:GLY480 4.0 46.3 1.0
CA D:TRP482 4.0 51.5 1.0
ND2 D:ASN478 4.1 52.9 1.0
CB D:TRP482 4.2 52.4 1.0
C D:SER481 4.4 47.0 1.0
OD1 D:ASN478 4.5 53.0 1.0
N D:SER481 4.5 46.6 1.0
CG D:ASN478 4.5 52.5 1.0
CZ D:ARG459 4.7 51.9 1.0
NH2 D:ARG459 4.7 51.9 1.0
N D:GLY480 4.9 47.1 1.0
O D:SER481 4.9 47.1 1.0
CA D:SER481 4.9 46.7 1.0

Chlorine binding site 10 out of 12 in 5oar

Go back to Chlorine Binding Sites List in 5oar
Chlorine binding site 10 out of 12 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl709

b:52.9
occ:0.50
 CL D:CL709 0.0 52.9 0.5
CL D:CL709 2.4 54.3 0.5
NH1 D:ARG368 2.9 0.3 1.0
CG D:ASP372 4.0 89.3 1.0
CB D:ASP372 4.0 88.6 1.0
CZ D:ARG368 4.2 0.2 1.0
OD1 D:ASP372 4.2 87.9 1.0
CG D:ARG368 4.4 0.2 1.0
OD2 D:ASP372 4.4 88.1 1.0
NH2 D:ARG368 4.9 0.7 1.0
CD D:ARG368 4.9 0.4 1.0
NE D:ARG368 4.9 0.7 1.0

Reference:

J.Skerlova, J.Blaha, P.Pachl, K.Hofbauerova, Z.Kukacka, P.Man, P.Pompach, P.Novak, Z.Otwinowski, J.Brynda, O.Vanek, P.Rezacova. Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae Sheds Light Onto Its Substrate Specificity, High Stability, and Regulation By Propeptide. Febs J. V. 285 580 2018.
ISSN: ISSN 1742-4658
PubMed: 29239122
DOI: 10.1111/FEBS.14360
Page generated: Fri Jul 26 14:22:04 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy