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Chlorine in PDB 5oc4: Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant

Protein crystallography data

The structure of Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant, PDB code: 5oc4 was solved by C.Bou-Nader, L.Pecqueur, D.Hamdane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.97 / 1.71
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 83.940, 83.940, 56.500, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 21.5

Other elements in 5oc4:

The structure of Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant also contains other interesting chemical elements:

Arsenic (As) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant (pdb code 5oc4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant, PDB code: 5oc4:

Chlorine binding site 1 out of 1 in 5oc4

Go back to Chlorine Binding Sites List in 5oc4
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Trna-Dihydrouridine(20) Synthase Dsrbd R361A-R362A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:58.5
occ:1.00
N A:GLU438 3.1 36.8 1.0
N A:ARG440 3.5 51.6 1.0
N A:GLY439 3.5 44.8 1.0
CB A:ARG440 3.7 51.2 0.4
CB A:ARG440 3.8 50.4 0.6
NH2 A:ARG440 3.8 69.1 0.4
CA A:GLU438 3.8 38.1 1.0
CB A:GLU438 4.0 39.5 1.0
C A:GLU438 4.0 45.8 1.0
C A:PRO437 4.0 37.1 1.0
CG A:ARG440 4.1 56.8 0.4
CA A:PRO437 4.1 33.3 1.0
CA A:ARG440 4.1 52.1 0.4
CA A:ARG440 4.2 51.9 0.6
CG A:ARG440 4.3 53.2 0.6
CA A:GLY439 4.4 46.0 1.0
CD A:ARG440 4.4 56.3 0.6
C A:GLY439 4.4 53.0 1.0
CB A:PRO437 4.5 35.6 1.0
CZ A:ARG440 4.5 80.2 0.4
CG A:GLU438 4.6 47.7 1.0
O A:ARG440 4.7 57.1 1.0
O A:HOH713 4.8 48.5 1.0
CD A:ARG440 4.8 62.3 0.4
C A:ARG440 4.8 58.3 1.0
NE A:ARG440 4.9 66.3 0.4
CD A:GLU438 5.0 53.7 1.0

Reference:

C.Bou-Nader, P.Barraud, L.Pecqueur, J.Perez, C.Velours, W.Shepard, M.Fontecave, C.Tisne, D.Hamdane. Molecular Basis For Transfer Rna Recognition By the Double-Stranded Rna-Binding Domain of Human Dihydrouridine Synthase 2. Nucleic Acids Res. V. 47 3117 2019.
ISSN: ESSN 1362-4962
PubMed: 30605527
DOI: 10.1093/NAR/GKY1302
Page generated: Sat Dec 12 12:12:03 2020

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