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Chlorine in PDB 5ofu: Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State.

Enzymatic activity of Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State.

All present enzymatic activity of Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State.:
3.1.3.11;

Protein crystallography data

The structure of Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State., PDB code: 5ofu was solved by M.Yuan, M.G.Vasquez-Valdivieso, I.W.Mcnae, P.A.M.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.25 / 2.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.590, 109.250, 140.510, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State. (pdb code 5ofu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State., PDB code: 5ofu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5ofu

Go back to Chlorine Binding Sites List in 5ofu
Chlorine binding site 1 out of 2 in the Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:31.1
occ:1.00
OG B:SER131 3.2 36.8 1.0
OG A:SER131 3.2 40.2 1.0
N B:SER131 3.2 40.0 1.0
N A:SER131 3.3 40.8 1.0
CB B:SER131 3.4 37.0 1.0
CB A:SER131 3.4 39.0 1.0
CG2 A:ILE249 3.6 35.8 1.0
CG2 B:ILE249 3.7 38.2 1.0
CB B:VAL130 3.8 46.6 1.0
CB A:VAL130 3.8 46.4 1.0
CA B:SER131 3.9 37.3 1.0
CA A:SER131 4.0 39.2 1.0
CG1 A:ILE249 4.2 36.7 1.0
CD1 A:ILE249 4.2 35.9 1.0
CG1 B:ILE249 4.2 37.3 1.0
CD1 B:ILE249 4.2 37.4 1.0
C B:VAL130 4.2 42.1 1.0
C A:VAL130 4.3 42.1 1.0
CA B:VAL130 4.3 45.0 1.0
CG2 B:VAL130 4.4 47.7 1.0
CG2 A:VAL130 4.4 46.2 1.0
CA A:VAL130 4.4 43.1 1.0
CB A:ILE249 4.6 35.7 1.0
CB B:ILE249 4.6 36.8 1.0
CG1 B:VAL130 4.7 48.1 1.0
CG1 A:VAL130 4.7 48.8 1.0

Chlorine binding site 2 out of 2 in 5ofu

Go back to Chlorine Binding Sites List in 5ofu
Chlorine binding site 2 out of 2 in the Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Leishmania Major Fructose-1,6-Bisphosphatase in T-State. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:39.6
occ:1.00
OG C:SER131 3.1 37.9 1.0
OG D:SER131 3.1 39.5 1.0
N C:SER131 3.2 42.0 1.0
N D:SER131 3.2 40.2 1.0
CB D:SER131 3.4 40.3 1.0
CB C:SER131 3.4 38.6 1.0
CG2 D:ILE249 3.8 39.3 1.0
CB C:VAL130 3.8 49.1 1.0
CG2 C:ILE249 3.8 38.0 1.0
CB D:VAL130 3.8 45.9 1.0
CA C:SER131 3.9 39.6 1.0
CA D:SER131 3.9 39.1 1.0
C C:VAL130 4.2 44.0 1.0
C D:VAL130 4.2 41.7 1.0
CD1 D:ILE249 4.3 37.6 1.0
CG1 D:ILE249 4.3 38.1 1.0
CA C:VAL130 4.3 46.7 1.0
CD1 C:ILE249 4.3 37.6 1.0
CA D:VAL130 4.4 43.3 1.0
CG1 C:ILE249 4.4 38.3 1.0
CG2 C:VAL130 4.4 49.0 1.0
CG2 D:VAL130 4.4 46.3 1.0
CB D:ILE249 4.7 39.0 1.0
CG1 C:VAL130 4.7 49.4 1.0
CB C:ILE249 4.7 38.4 1.0
CG1 D:VAL130 4.7 45.7 1.0

Reference:

M.Yuan, M.G.Vasquez-Valdivieso, I.W.Mcnae, P.A.M.Michels, L.A.Fothergill-Gilmore, M.D.Walkinshaw. Structures of Leishmania Fructose-1,6-Bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition. J. Mol. Biol. V. 429 3075 2017.
ISSN: ESSN 1089-8638
PubMed: 28882541
DOI: 10.1016/J.JMB.2017.08.010
Page generated: Fri Jul 26 14:28:38 2024

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