Atomistry » Chlorine » PDB 5ofs-5on9 » 5oiu
Atomistry »
  Chlorine »
    PDB 5ofs-5on9 »
      5oiu »

Chlorine in PDB 5oiu: Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus

Protein crystallography data

The structure of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus, PDB code: 5oiu was solved by V.Karuppiah, J.P.Derrick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.11 / 2.44
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 220.390, 107.660, 137.830, 90.00, 112.95, 90.00
R / Rfree (%) 19 / 24.6

Other elements in 5oiu:

The structure of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Zinc (Zn) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus (pdb code 5oiu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus, PDB code: 5oiu:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 1 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:39.7
occ:1.00
N A:LEU287 3.4 32.6 1.0
CB A:SER163 3.5 33.7 1.0
CA A:SER163 3.6 37.2 1.0
O A:GLY162 3.8 40.5 1.0
O A:LEU287 3.8 37.0 1.0
CA A:ARG286 3.9 34.1 1.0
CB A:ARG286 3.9 32.8 1.0
CD A:ARG286 4.0 38.0 1.0
N A:SER163 4.2 34.2 1.0
C A:ARG286 4.2 35.6 1.0
C A:GLY162 4.2 35.8 1.0
CA A:LEU287 4.3 30.8 1.0
O A:THR161 4.5 34.1 1.0
CB A:LEU287 4.5 30.5 1.0
C A:LEU287 4.5 34.2 1.0
O A:HOH646 4.6 44.9 1.0
CG A:ARG397 4.7 51.5 1.0
CG A:ARG286 4.7 31.2 1.0
OG A:SER163 4.7 46.9 1.0
CG A:PRO160 4.8 39.4 1.0
C A:SER163 4.9 33.1 1.0
CG A:LEU287 4.9 29.1 1.0

Chlorine binding site 2 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 2 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:53.3
occ:1.00
N F:GLN201 3.0 36.2 1.0
C A:THR111 3.3 47.5 1.0
O A:THR111 3.5 49.2 1.0
CA F:THR200 3.6 38.8 1.0
CA A:THR111 3.7 46.0 1.0
N A:VAL112 3.7 48.6 1.0
CB F:GLN201 3.8 39.8 1.0
C F:THR200 3.8 42.0 1.0
CA F:GLN201 3.9 43.6 1.0
O A:PRO110 4.0 46.0 1.0
N A:THR111 4.0 43.4 1.0
CA A:VAL112 4.1 53.0 1.0
C A:PRO110 4.1 45.1 1.0
CG2 F:THR200 4.2 37.7 1.0
O F:GLN199 4.2 46.9 1.0
O F:GLN201 4.3 35.6 1.0
CB F:THR200 4.4 42.0 1.0
CG2 A:VAL112 4.5 52.4 1.0
C F:GLN201 4.6 38.8 1.0
N F:THR200 4.7 40.2 1.0
CB A:PRO110 4.7 39.9 1.0
OG1 F:THR200 4.7 40.7 1.0
C F:GLN199 4.9 43.3 1.0
CB A:VAL112 5.0 50.0 1.0

Chlorine binding site 3 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 3 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl504

b:44.3
occ:1.00
N B:LEU287 3.2 34.0 1.0
CB B:SER163 3.3 34.0 1.0
CA B:SER163 3.6 35.1 1.0
O B:GLY162 3.7 40.2 1.0
CA B:ARG286 3.8 32.9 1.0
O B:LEU287 3.9 41.0 1.0
CD B:ARG286 3.9 31.4 1.0
CB B:ARG286 4.0 30.4 1.0
C B:ARG286 4.0 36.7 1.0
N B:SER163 4.1 34.5 1.0
C B:GLY162 4.2 34.5 1.0
CA B:LEU287 4.2 30.3 1.0
CB B:LEU287 4.3 29.7 1.0
OG B:SER163 4.3 39.2 1.0
C B:LEU287 4.5 36.1 1.0
O B:THR161 4.5 39.8 1.0
CG B:PRO160 4.6 32.8 1.0
CG B:ARG286 4.6 33.2 1.0
CG B:LEU287 4.8 29.3 1.0
CD B:ARG397 4.8 48.5 1.0
C B:SER163 4.9 30.2 1.0
NE B:ARG397 4.9 61.2 1.0

Chlorine binding site 4 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 4 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl505

b:49.3
occ:1.00
C B:THR111 3.2 46.4 1.0
N E:GLN201 3.3 42.6 1.0
O B:THR111 3.3 48.2 1.0
N B:VAL112 3.6 47.5 1.0
CA B:THR111 3.7 46.8 1.0
CA E:THR200 3.8 42.8 1.0
CA B:VAL112 3.9 51.5 1.0
CG2 E:THR200 4.0 32.0 1.0
O B:PRO110 4.0 50.0 1.0
N B:THR111 4.0 46.3 1.0
CB E:GLN201 4.0 43.7 1.0
C E:THR200 4.0 41.2 1.0
C B:PRO110 4.1 47.0 1.0
CA E:GLN201 4.2 43.7 1.0
CG1 B:VAL112 4.3 52.8 1.0
O E:GLN201 4.3 41.9 1.0
O E:GLN199 4.3 46.1 1.0
CB E:THR200 4.4 44.2 1.0
CB B:PRO110 4.6 42.5 1.0
C E:GLN201 4.7 48.8 1.0
OG1 E:THR200 4.8 42.8 1.0
CB B:VAL112 4.8 48.1 1.0
N E:THR200 4.9 38.9 1.0
CA B:PRO110 5.0 42.4 1.0

Chlorine binding site 5 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 5 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl504

b:45.1
occ:1.00
C C:THR111 3.0 43.6 1.0
O C:THR111 3.0 49.6 1.0
N B:GLN201 3.4 41.3 1.0
N C:VAL112 3.4 39.4 1.0
CA C:THR111 3.5 41.5 1.0
CA C:VAL112 3.9 46.9 1.0
N C:THR111 3.9 37.8 1.0
CA B:THR200 3.9 36.7 1.0
CB B:GLN201 4.1 38.8 1.0
C C:PRO110 4.2 43.3 1.0
C B:THR200 4.2 39.4 1.0
O C:PRO110 4.2 41.5 1.0
O B:GLN199 4.3 35.7 1.0
CA B:GLN201 4.3 36.6 1.0
CG2 C:VAL112 4.3 37.1 1.0
CG2 B:THR200 4.5 32.9 1.0
O B:GLN201 4.6 37.6 1.0
CB B:THR200 4.7 37.9 1.0
CB C:PRO110 4.7 45.9 1.0
CB C:VAL112 4.8 43.5 1.0
N B:THR200 4.9 39.2 1.0
OG1 B:THR200 4.9 42.3 1.0
CB C:THR111 5.0 40.5 1.0
C C:VAL112 5.0 45.1 1.0
C B:GLN201 5.0 32.5 1.0

Chlorine binding site 6 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 6 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl505

b:50.6
occ:1.00
N C:SER60 3.7 50.1 1.0
CA C:SER60 3.7 49.5 1.0
NE2 C:GLN47 3.8 50.2 1.0
C C:TYR59 3.9 48.9 1.0
C C:SER60 3.9 49.7 1.0
CG2 C:THR61 3.9 47.9 1.0
O C:TYR59 4.0 52.2 1.0
CB C:PRO58 4.0 34.5 1.0
N C:THR61 4.3 46.3 1.0
C C:PRO58 4.3 42.1 1.0
O C:PRO58 4.3 40.4 1.0
O C:SER60 4.3 48.9 1.0
N C:TYR59 4.6 36.7 1.0
CA C:PRO58 4.7 38.9 1.0
CD C:GLN47 4.8 56.6 1.0
CA C:TYR59 4.8 44.4 1.0
OE1 C:GLN47 4.9 60.6 1.0
CG C:PRO58 4.9 30.4 1.0

Chlorine binding site 7 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 7 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl506

b:25.3
occ:1.00
N C:LEU287 3.4 34.9 1.0
CB C:SER163 3.4 43.0 1.0
CA C:SER163 3.8 40.4 1.0
CD C:ARG286 3.9 32.6 1.0
CA C:ARG286 3.9 38.6 1.0
CD C:ARG397 4.1 36.3 1.0
O C:LEU287 4.1 34.9 1.0
C C:ARG286 4.2 37.2 1.0
CB C:ARG286 4.2 36.7 1.0
CG C:PRO160 4.3 42.3 1.0
CA C:LEU287 4.4 35.0 1.0
CB C:LEU287 4.5 35.5 1.0
N C:SER163 4.5 40.2 1.0
CG C:ARG286 4.7 34.5 1.0
C C:LEU287 4.7 38.5 1.0
O C:GLY162 4.7 40.7 1.0
OG C:SER163 4.7 45.4 1.0
C C:GLY162 4.9 41.9 1.0
C C:SER163 4.9 39.4 1.0
O C:THR161 4.9 47.4 1.0
NE C:ARG286 5.0 41.8 1.0
NE C:ARG397 5.0 38.8 1.0

Chlorine binding site 8 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 8 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl504

b:42.9
occ:1.00
C D:THR111 3.1 42.6 1.0
O D:THR111 3.3 48.1 1.0
N A:GLN201 3.4 34.0 1.0
N D:VAL112 3.4 39.8 1.0
CA D:THR111 3.6 42.6 1.0
CA A:THR200 3.9 35.1 1.0
CA D:VAL112 3.9 49.0 1.0
O D:PRO110 3.9 43.3 1.0
N D:THR111 4.0 36.6 1.0
C D:PRO110 4.0 43.0 1.0
CB A:GLN201 4.1 39.9 1.0
C A:THR200 4.1 38.4 1.0
CA A:GLN201 4.3 37.1 1.0
O A:GLN199 4.3 41.4 1.0
CG1 D:VAL112 4.3 35.1 1.0
CG2 A:THR200 4.3 33.2 1.0
O A:GLN201 4.4 40.1 1.0
CB D:PRO110 4.6 44.8 1.0
CB A:THR200 4.6 39.4 1.0
CB D:VAL112 4.8 43.5 1.0
N A:THR200 4.9 35.7 1.0
C A:GLN201 4.9 39.5 1.0
CA D:PRO110 4.9 40.6 1.0
OG1 A:THR200 4.9 41.4 1.0
CB D:THR111 5.0 36.9 1.0

Chlorine binding site 9 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 9 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl505

b:47.1
occ:1.00
N D:SER60 3.9 40.4 1.0
CB D:PRO58 3.9 36.1 1.0
NE2 D:GLN47 3.9 48.9 1.0
C D:TYR59 4.0 45.2 1.0
O D:TYR59 4.0 45.6 1.0
CA D:SER60 4.1 43.6 1.0
CG2 D:THR61 4.2 48.4 1.0
C D:PRO58 4.2 37.9 1.0
C D:SER60 4.3 45.5 1.0
O D:PRO58 4.3 36.7 1.0
N D:TYR59 4.4 41.4 1.0
O D:SER60 4.5 51.8 1.0
CA D:PRO58 4.6 35.4 1.0
CG D:PRO58 4.7 35.6 1.0
N D:THR61 4.7 46.1 1.0
CA D:TYR59 4.8 48.1 1.0
CD D:GLN47 5.0 58.7 1.0

Chlorine binding site 10 out of 12 in 5oiu

Go back to Chlorine Binding Sites List in 5oiu
Chlorine binding site 10 out of 12 in the Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Pilf Type IV Pilus Assembly Atpase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl506

b:21.7
occ:1.00
N D:LEU287 3.3 38.8 1.0
CB D:SER163 3.8 37.1 1.0
CA D:ARG286 3.8 36.7 1.0
CA D:SER163 3.9 38.0 1.0
CB D:ARG286 3.9 42.1 1.0
O D:LEU287 4.0 34.8 1.0
CD D:ARG286 4.0 37.6 1.0
C D:ARG286 4.1 37.9 1.0
CA D:LEU287 4.2 33.9 1.0
CB D:LEU287 4.3 33.9 1.0
CD D:ARG397 4.3 41.0 1.0
NE D:ARG397 4.3 46.0 1.0
CG D:PRO160 4.5 41.5 1.0
O D:GLY162 4.6 39.7 1.0
C D:LEU287 4.6 40.4 1.0
N D:SER163 4.6 37.1 1.0
CG D:ARG286 4.6 40.7 1.0
C D:GLY162 4.9 32.7 1.0
CG D:LEU287 4.9 38.3 1.0
C D:SER163 5.0 37.9 1.0

Reference:

R.Collins, V.Karuppiah, C.A.Siebert, R.Dajani, A.Thistlethwaite, J.P.Derrick. Structural Cycle of the Thermus Thermophilus Pilf Atpase: the Powering of Type Iva Pilus Assembly. Sci Rep V. 8 14022 2018.
ISSN: ESSN 2045-2322
PubMed: 30232337
DOI: 10.1038/S41598-018-32218-3
Page generated: Fri Jul 26 14:30:36 2024

Last articles

Al in 8SHE
Al in 8SHG
Al in 8SHF
Al in 8SHD
Al in 8SHA
Al in 8SGL
Al in 8SH9
Al in 8SGC
Al in 8SG9
Al in 8SFF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy