Chlorine in PDB 5omc: Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain

The structure of Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain, PDB code: 5omc was solved by I.Deshpande, A.Seeber, K.Shimada, J.J.Keusch, H.Gut, S.M.Gasser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.29 / 2.38
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.420, 94.590, 170.840, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 26.1

The binding sites of Chlorine atom in the Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain (pdb code 5omc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain, PDB code: 5omc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:59.4 occ:1.00 N B:ASN63 3.2 38.3 1.0 CG1 C:VAL18 3.5 45.1 1.0 O C:VAL18 3.7 45.5 1.0 CA B:ARG62 4.0 34.6 1.0 CA B:ASN63 4.0 37.6 1.0 CB B:ARG62 4.0 30.6 1.0 C B:ARG62 4.1 42.0 1.0 OD1 B:ASN63 4.2 40.9 1.0 CG B:ASN63 4.5 41.5 1.0 O B:HOH301 4.5 40.0 1.0 C C:VAL18 4.5 47.6 1.0 OD1 C:ASN19 4.8 58.1 1.0 O C:HOH201 4.8 41.9 1.0 CB C:VAL18 4.9 46.4 1.0 ND2 B:ASN63 4.9 30.3 1.0 CB B:ASN63 4.9 31.4 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:69.7 occ:1.00 N D:GLN36 4.0 43.8 1.0 CB D:SER35 4.2 46.2 1.0 CA D:SER35 4.2 44.6 1.0 CG D:GLN36 4.4 46.4 1.0 CB D:GLN36 4.6 45.0 1.0 C D:SER35 4.7 47.5 1.0 OE1 D:GLN36 4.9 63.2 1.0 CA D:GLN36 5.0 43.3 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of K. Lactis DDC2 N-Terminus in Complex with S. Cerevisiae RFA1 (K45E Mutant) N-Ob Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl202 b:77.5 occ:1.00 CD D:ARG92 4.0 87.4 1.0 O D:HOH320 4.3 66.1 1.0 NE D:ARG92 4.4 0.9 1.0 CZ D:ARG92 4.8 0.1 1.0 NH1 D:ARG92 4.9 0.4 1.0

I.Deshpande, A.Seeber, K.Shimada, J.J.Keusch, H.Gut, S.M.Gasser. Structural Basis of MEC1-DDC2-Rpa Assembly and Activation on Single-Stranded Dna at Sites of Damage. Mol. Cell V. 68 431 2017.
ISSN: ISSN 1097-4164
PubMed: 29033322
DOI: 10.1016/J.MOLCEL.2017.09.019