Chlorine in PDB 5opq: A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides.

The structure of A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides., PDB code: 5opq was solved by E.Ficko-Blean, G.Michel, M.Czjzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.70 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	222.000, 107.500, 165.800, 90.00, 114.00, 90.00
R / Rfree (%)	14.6 / 17.6

The binding sites of Chlorine atom in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides. (pdb code 5opq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides., PDB code: 5opq:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl704 b:21.5 occ:1.00 O A:HOH1256 2.9 18.1 1.0 O A:HOH1308 3.1 17.4 1.0 NE A:ARG590 3.2 12.9 1.0 CD A:ARG590 3.8 13.2 1.0 CD A:ARG584 3.8 15.0 1.0 CG2 A:THR534 3.8 13.5 1.0 CD2 A:PHE588 3.9 12.0 1.0 CE2 A:TYR535 4.1 11.9 1.0 CB A:THR534 4.1 12.0 1.0 CG A:ARG584 4.1 14.2 1.0 CG A:ARG590 4.3 13.8 1.0 CZ A:ARG590 4.3 13.9 1.0 CD2 A:TYR535 4.4 11.9 1.0 CG A:PHE588 4.4 12.4 1.0 CB A:PHE588 4.4 13.2 1.0 NH2 A:ARG590 4.5 14.2 1.0 CE2 A:PHE588 4.5 12.2 1.0 O A:HOH1337 4.6 33.3 1.0 CA A:THR534 4.7 12.2 1.0 CB A:ARG584 4.9 12.7 1.0 O A:ARG584 5.0 12.2 1.0

Chlorine binding site 2 out of 4 in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides. within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl703 b:23.7 occ:1.00 O B:HOH1267 2.9 18.9 1.0 O B:HOH1282 3.1 19.2 1.0 NE B:ARG590 3.2 13.8 1.0 CD B:ARG590 3.7 16.2 1.0 CG2 B:THR534 3.8 13.4 1.0 CD2 B:PHE588 3.8 14.1 1.0 CD B:ARG584 3.8 15.9 1.0 CE2 B:TYR535 4.1 10.8 1.0 CB B:THR534 4.1 14.0 1.0 CG B:ARG590 4.2 15.1 1.0 CG B:ARG584 4.2 14.8 1.0 CZ B:ARG590 4.3 15.6 1.0 CB B:PHE588 4.3 13.0 1.0 CD2 B:TYR535 4.4 11.6 1.0 CG B:PHE588 4.4 14.0 1.0 CE2 B:PHE588 4.5 13.2 1.0 NH2 B:ARG590 4.6 16.2 1.0 CA B:THR534 4.7 11.9 1.0 CB B:ARG584 4.9 14.7 1.0

Chlorine binding site 3 out of 4 in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides. within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl704 b:24.1 occ:1.00 O C:HOH1292 2.9 19.9 1.0 O C:HOH1330 3.0 20.2 1.0 NE C:ARG590 3.3 14.3 1.0 CD2 C:PHE588 3.8 14.4 1.0 CD C:ARG590 3.8 14.8 1.0 CG2 C:THR534 3.8 13.0 1.0 CD C:ARG584 3.8 17.4 1.0 CE2 C:TYR535 4.1 12.3 1.0 CG C:ARG584 4.1 17.1 1.0 CB C:THR534 4.1 13.1 1.0 CG C:ARG590 4.2 15.7 1.0 CB C:PHE588 4.4 16.0 1.0 CD2 C:TYR535 4.4 13.8 1.0 CG C:PHE588 4.4 14.9 1.0 CZ C:ARG590 4.4 14.8 1.0 CE2 C:PHE588 4.5 17.3 1.0 NH2 C:ARG590 4.5 17.1 1.0 O C:HOH1350 4.6 38.2 1.0 CA C:THR534 4.7 12.8 1.0 CB C:ARG584 5.0 15.1 1.0 O C:ARG584 5.0 14.0 1.0

Chlorine binding site 4 out of 4 in the A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of A 3,6-Anhydro-D-Galactosidase Produced By Zobellia Galactanivorans. This Is An Exo-Lytic Enzyme That Hydrolyzes Terminal 3,6-Anhydro-D- Galactose From the Non-Reducing End of Carrageenan Oligosaccharides. within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl703 b:24.8 occ:1.00 O D:HOH1221 3.0 21.8 1.0 O D:HOH1282 3.1 21.0 1.0 NE D:ARG590 3.3 15.5 1.0 CD D:ARG584 3.7 18.7 1.0 CD D:ARG590 3.7 16.8 1.0 CD2 D:PHE588 3.8 18.7 1.0 CG2 D:THR534 3.8 14.3 1.0 CE2 D:TYR535 4.1 14.1 1.0 CB D:THR534 4.1 14.1 1.0 CG D:ARG584 4.1 17.0 1.0 CG D:ARG590 4.3 17.9 1.0 CD2 D:TYR535 4.3 13.4 1.0 CZ D:ARG590 4.4 17.8 1.0 CB D:PHE588 4.4 16.9 1.0 CG D:PHE588 4.5 17.1 1.0 NH2 D:ARG590 4.5 20.3 1.0 CE2 D:PHE588 4.5 16.9 1.0 CA D:THR534 4.7 13.6 1.0 CB D:ARG584 5.0 16.2 1.0

E.Ficko-Blean, A.Prechoux, F.Thomas, T.Rochat, R.Larocque, Y.Zhu, M.Stam, S.Genicot, M.Jam, A.Calteau, B.Viart, D.Ropartz, D.Perez-Pascual, G.Correc, M.Matard-Mann, K.A.Stubbs, H.Rogniaux, A.Jeudy, T.Barbeyron, C.Medigue, M.Czjzek, D.Vallenet, M.J.Mcbride, E.Duchaud, G.Michel. Carrageenan Catabolism Is Encoded By A Complex Regulon in Marine Heterotrophic Bacteria. Nat Commun V. 8 1685 2017.
ISSN: ESSN 2041-1723
PubMed: 29162826
DOI: 10.1038/S41467-017-01832-6