Chlorine in PDB 5ore: Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6

The structure of Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6, PDB code: 5ore was solved by A.Vigouroux, S.Morera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.18 / 2.35
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	59.300, 59.300, 125.990, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.1

The binding sites of Chlorine atom in the Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6 (pdb code 5ore). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6, PDB code: 5ore:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:0.6 occ:1.00 NZ A:LYS267 3.8 59.5 1.0 OD1 A:ASP46 3.9 53.0 1.0 OD2 A:ASP51 4.0 64.9 1.0 OD1 A:ASP51 4.1 63.7 1.0 OD2 A:ASP46 4.1 71.2 1.0 CG A:ASP46 4.4 58.6 1.0 CG A:ASP51 4.4 59.5 1.0 CZ2 A:TRP268 4.5 43.4 1.0 CE A:LYS267 4.6 59.5 1.0

Chlorine binding site 2 out of 3 in the Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:98.0 occ:1.00 O A:LYS81 3.8 72.9 1.0 OD1 A:ASP84 4.0 73.0 1.0 OD2 A:ASP84 4.4 72.5 1.0 CG A:ASP84 4.7 69.4 1.0 C A:LYS81 5.0 74.0 1.0

Chlorine binding site 3 out of 3 in the Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the Periplasmic Binding Protein (Pbp) Occj From Agrobacterium Tumefaciens B6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:77.3 occ:1.00 O A:PRO105 3.2 47.1 1.0 CD1 A:ILE104 3.6 52.1 1.0 CG A:PRO275 3.8 58.5 1.0 OG A:SER256 4.1 60.5 1.0 O A:GLN276 4.3 71.5 1.0 CG1 A:ILE104 4.3 50.7 1.0 CG2 A:ILE252 4.3 43.8 1.0 C A:PRO105 4.4 45.9 1.0 CB A:PRO275 4.5 55.6 1.0 CB A:ILE104 4.5 51.4 1.0 N A:PRO105 4.7 45.1 1.0 O A:HIS279 4.7 79.1 1.0 CD A:PRO275 4.7 54.0 1.0 CD A:PRO105 4.8 46.8 1.0 CB A:SER256 4.9 57.1 1.0 CA A:PRO105 4.9 42.6 1.0

A.Vigouroux, A.El Sahili, J.Lang, M.Aumont-Nicaise, Y.Dessaux, D.Faure, S.Morera. Structural Basis For High Specificity of Octopine Binding in the Plant Pathogen Agrobacterium Tumefaciens. Sci Rep V. 7 18033 2017.
ISSN: ESSN 2045-2322
PubMed: 29269740
DOI: 10.1038/S41598-017-18243-8