Atomistry » Chlorine » PDB 5os5-5oul » 5ou7
Atomistry »
  Chlorine »
    PDB 5os5-5oul »
      5ou7 »

Chlorine in PDB 5ou7: Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn

Protein crystallography data

The structure of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn, PDB code: 5ou7 was solved by L.J.Feitsma, E.G.Huizinga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 113.81 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 78.650, 44.050, 117.660, 90.00, 104.69, 90.00
R / Rfree (%) 22.1 / 26

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn (pdb code 5ou7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn, PDB code: 5ou7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 1 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:58.9
occ:1.00
 O A:HOH313 2.5 52.3 1.0
O A:HOH398 2.9 36.8 1.0
CD2 A:LEU17 3.6 26.4 0.4
OH A:TYR151 3.6 22.9 1.0
OH A:TYR122 4.1 27.9 1.0
CZ A:TYR122 4.4 25.3 1.0
CD1 A:LEU17 4.4 20.4 0.6
O A:HOH330 4.5 24.2 1.0
CG A:LEU17 4.5 24.8 0.4
CD1 A:LEU17 4.6 25.8 0.4
CE1 A:TYR122 4.6 26.8 1.0
CB A:LEU17 4.6 21.2 0.6
CZ2 A:TRP130 4.7 22.8 1.0
CZ A:TYR151 4.7 20.0 1.0
CB A:LEU17 4.8 23.5 0.4
CE2 A:TYR122 4.9 26.8 1.0
OE2 A:GLU128 4.9 57.3 1.0
OE1 A:GLU128 5.0 53.8 1.0

Chlorine binding site 2 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 2 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:40.9
occ:1.00
 O A:ARG27 2.9 21.3 1.0
NE2 A:GLN29 2.9 29.4 0.5
OG A:SER9 3.0 23.6 1.0
CG A:GLN29 3.2 28.0 0.5
CB A:GLN11 3.4 23.3 0.5
CG A:GLN11 3.5 24.7 0.5
CB A:GLN11 3.5 23.8 0.5
CD A:GLN29 3.5 28.7 0.5
N A:GLN11 3.6 19.9 1.0
CB A:GLN29 3.7 29.3 0.5
CD A:GLN11 3.8 26.6 0.5
C A:ARG27 3.8 23.9 1.0
O A:SER9 3.8 20.6 1.0
C A:SER9 3.9 20.1 1.0
CG A:ARG27 4.0 28.7 0.5
N A:GLN29 4.0 24.8 1.0
CB A:SER9 4.0 21.8 1.0
CB A:GLN29 4.1 27.5 0.5
OE1 A:GLN11 4.1 30.5 0.5
N A:LEU10 4.1 19.0 1.0
CA A:GLN11 4.2 21.8 0.5
CA A:LEU10 4.2 18.6 1.0
CA A:GLN11 4.2 21.9 0.5
CB A:ARG27 4.2 26.4 0.5
C A:LEU10 4.2 19.5 1.0
CB A:ARG27 4.3 26.9 0.5
OE1 A:GLN29 4.3 36.4 0.5
NE2 A:GLN11 4.3 27.1 0.5
O A:HOH378 4.4 41.7 1.0
C A:CYS28 4.4 23.9 1.0
CG A:ARG27 4.5 29.5 0.5
CA A:GLN29 4.5 26.4 0.5
CD A:ARG27 4.5 31.1 0.5
CA A:CYS28 4.6 24.2 1.0
OE1 A:GLN11 4.6 27.0 0.5
CA A:ARG27 4.6 24.3 0.5
CA A:SER9 4.6 20.5 1.0
N A:CYS28 4.6 23.8 1.0
CA A:ARG27 4.6 24.4 0.5
CA A:GLN29 4.6 25.6 0.5
CG A:GLN11 4.7 24.1 0.5
O A:HOH301 4.7 55.6 1.0
OE1 A:GLN29 4.7 28.6 0.5
CD A:GLN11 4.8 24.6 0.5
CD A:GLN29 4.9 34.0 0.5
CG A:GLN29 4.9 31.9 0.5

Chlorine binding site 3 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 3 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:36.7
occ:1.00
 O A:HOH362 2.7 20.3 1.0
OG1 A:THR139 2.8 23.3 1.0
OG1 A:THR107 2.8 22.0 1.0
CG2 A:THR139 3.3 23.0 1.0
CB A:THR139 3.5 22.7 1.0
N A:THR107 3.7 21.6 1.0
CB A:ASP105 3.8 25.4 1.0
CA A:THR107 3.8 22.0 1.0
CB A:THR107 3.9 21.9 1.0
C A:VAL106 3.9 22.1 1.0
CA A:THR139 3.9 22.6 1.0
O A:VAL106 4.0 22.6 1.0
CA A:GLY101 4.1 22.7 1.0
OD2 A:ASP105 4.3 27.1 1.0
O A:HOH328 4.3 22.0 1.0
N A:VAL106 4.4 22.9 1.0
CG A:ASP105 4.5 29.1 1.0
C A:ASP105 4.6 23.7 1.0
CA A:VAL106 4.7 21.7 1.0
O A:HOH329 4.8 20.8 1.0
CG2 A:THR107 4.8 21.2 1.0
N A:SER102 4.8 22.4 1.0
CA A:ASP105 4.8 25.5 1.0
N A:GLY101 4.9 22.7 1.0
N A:THR139 4.9 21.9 1.0
C A:THR139 5.0 22.9 1.0
O A:ASP105 5.0 23.4 1.0

Chlorine binding site 4 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 4 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:58.6
occ:1.00
 NH2 A:ARG60 3.0 37.8 1.0
O A:VAL90 3.3 23.4 1.0
CZ A:ARG60 3.9 33.0 1.0
NE A:ARG60 4.0 30.5 1.0
C A:VAL90 4.1 24.3 1.0
CA A:VAL90 4.1 22.6 1.0
CD1 A:LEU20 4.2 23.2 1.0
O A:HOH402 4.3 49.8 1.0
O A:GLY89 4.3 23.8 1.0
CG1 A:VAL90 4.5 23.6 1.0
O A:HOH396 4.8 42.6 1.0
CB A:VAL90 5.0 22.7 1.0

Chlorine binding site 5 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 5 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:39.6
occ:1.00
 O A:PRO4 2.8 25.6 1.0
CA A:LEU5 3.6 22.6 1.0
CD A:PRO6 3.7 20.9 1.0
C A:PRO4 3.8 23.7 1.0
N A:PRO6 3.9 20.6 1.0
C A:LEU5 3.9 21.4 1.0
CG A:PRO6 4.1 20.8 1.0
N A:LEU5 4.2 23.4 1.0
CD2 A:LEU5 4.6 26.4 1.0
O A:LEU5 4.8 21.2 1.0
CB A:LEU5 4.8 23.1 1.0
CA A:PRO6 4.8 19.8 1.0

Chlorine binding site 6 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 6 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:68.0
occ:1.00
 O B:HOH339 2.3 51.7 1.0
O B:HOH382 3.6 43.2 1.0
OH B:TYR151 3.7 21.6 1.0
OH B:TYR122 3.8 26.5 1.0
CZ B:TYR122 3.9 24.8 1.0
CE1 B:TYR122 4.2 25.1 1.0
CD1 B:LEU17 4.3 19.6 0.3
CZ2 B:TRP130 4.4 22.4 1.0
CE2 B:TYR122 4.4 25.7 1.0
OE2 B:GLU128 4.7 54.8 1.0
CH2 B:TRP130 4.7 21.9 1.0
CZ B:TYR151 4.8 19.5 1.0
O B:HOH360 4.8 52.8 1.0
O B:HOH323 4.8 28.4 1.0
OE1 B:GLU128 4.8 50.7 1.0
CB B:LEU17 4.9 20.4 0.3
CB B:LEU17 4.9 23.8 0.7
CE1 B:TYR151 5.0 19.9 1.0
CD1 B:TYR122 5.0 24.4 1.0

Chlorine binding site 7 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 7 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:49.9
occ:1.00
 O B:ARG27 2.8 23.1 1.0
OG B:SER9 2.9 22.0 1.0
OE1 B:GLN29 3.0 32.4 0.5
CG B:GLN29 3.3 31.4 0.5
CD B:GLN29 3.4 33.1 0.5
CG B:GLN11 3.5 31.3 0.7
CB B:GLN11 3.6 21.9 0.3
N B:GLN11 3.6 21.6 1.0
CB B:GLN29 3.6 29.9 0.5
CB B:GLN11 3.7 27.9 0.7
O B:SER9 3.7 22.5 1.0
C B:ARG27 3.7 25.2 1.0
CB B:GLN29 3.7 29.7 0.5
CD B:GLN11 3.8 35.7 0.7
C B:SER9 3.8 20.7 1.0
CB B:SER9 3.9 21.2 1.0
N B:GLN29 3.9 24.6 1.0
N B:LEU10 4.0 20.2 1.0
OE1 B:GLN11 4.1 39.8 0.7
CA B:LEU10 4.1 20.1 1.0
OE1 B:GLN29 4.1 35.6 0.5
C B:LEU10 4.1 20.6 1.0
CA B:GLN11 4.2 21.8 0.3
CG B:ARG27 4.2 32.0 0.5
NE2 B:GLN11 4.3 38.2 0.7
CB B:ARG27 4.3 29.1 0.5
CA B:GLN11 4.3 24.2 0.7
CB B:ARG27 4.3 28.7 0.5
C B:CYS28 4.3 23.9 1.0
CA B:GLN29 4.4 27.1 0.5
CA B:GLN29 4.5 27.1 0.5
CG B:ARG27 4.5 32.6 0.5
CA B:SER9 4.5 21.1 1.0
CA B:CYS28 4.5 24.4 1.0
N B:CYS28 4.5 24.8 1.0
NE2 B:GLN29 4.5 34.5 0.5
CA B:ARG27 4.6 26.0 0.5
CA B:ARG27 4.6 25.8 0.5
NE2 B:GLN11 4.7 21.1 0.3
CG B:GLN11 4.9 21.5 0.3
CG B:GLN29 4.9 31.7 0.5
CD B:GLN29 5.0 33.6 0.5
CD B:ARG27 5.0 34.8 0.5

Chlorine binding site 8 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 8 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:39.5
occ:1.00
 OG1 B:THR107 2.7 21.4 1.0
OG1 B:THR139 2.8 25.5 1.0
O B:HOH363 2.9 21.3 1.0
CG2 B:THR139 3.3 24.4 1.0
CB B:THR139 3.5 23.5 1.0
N B:THR107 3.6 21.2 1.0
CA B:THR107 3.7 21.5 1.0
CB B:THR107 3.7 21.0 1.0
C B:VAL106 3.7 21.6 1.0
CB B:ASP105 3.8 25.9 1.0
O B:VAL106 3.8 24.0 1.0
CA B:THR139 3.9 23.3 1.0
CA B:GLY101 4.0 23.0 1.0
N B:VAL106 4.4 22.3 1.0
OD2 B:ASP105 4.4 28.5 1.0
C B:ASP105 4.5 24.4 1.0
CA B:VAL106 4.6 21.8 1.0
CG B:ASP105 4.6 28.7 1.0
CG2 B:THR107 4.6 21.0 1.0
O B:HOH331 4.7 21.9 1.0
N B:SER102 4.8 24.0 1.0
N B:GLY101 4.8 23.1 1.0
CA B:ASP105 4.8 25.7 1.0
N B:THR139 4.8 21.6 1.0
C B:THR139 4.9 23.4 1.0
O B:ASP105 4.9 24.1 1.0
O B:ILE138 4.9 21.6 1.0
C B:GLY101 5.0 24.3 1.0
N B:VAL140 5.0 22.8 1.0

Chlorine binding site 9 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 9 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:59.4
occ:1.00
 NH2 B:ARG60 2.8 36.6 1.0
O B:VAL90 3.2 25.0 1.0
CZ B:ARG60 3.7 31.7 1.0
NE B:ARG60 3.7 28.4 1.0
CA B:VAL90 3.8 23.1 1.0
C B:VAL90 3.8 25.6 1.0
CD1 B:LEU20 3.9 23.3 1.0
O B:GLY89 4.0 24.6 1.0
CG1 B:VAL90 4.2 25.1 1.0
O B:HOH391 4.5 44.7 1.0
CB B:VAL90 4.6 23.9 1.0
N B:VAL90 4.8 22.1 1.0
C B:GLY89 4.9 22.7 1.0
NH1 B:ARG60 4.9 32.5 1.0

Chlorine binding site 10 out of 14 in 5ou7

Go back to Chlorine Binding Sites List in 5ou7
Chlorine binding site 10 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:40.4
occ:1.00
 O B:PRO4 2.7 24.2 1.0
CD B:PRO6 3.5 21.9 1.0
CA B:LEU5 3.7 22.1 1.0
C B:PRO4 3.8 23.1 1.0
N B:PRO6 3.8 21.5 1.0
C B:LEU5 3.9 21.6 1.0
CG B:PRO6 4.0 21.4 1.0
N B:LEU5 4.2 22.0 1.0
CD2 B:LEU5 4.7 23.9 1.0
CA B:PRO6 4.8 21.0 1.0
O B:LEU5 4.8 21.8 1.0
CB B:LEU5 4.8 21.8 1.0

Reference:

L.J.Feitsma, T.H.C.Brondijk, G.Jarvis, D.Hagemans, D.Bihan, N.Jerah, M.Versteeg, R.W.Farndale, E.G.Huizinga. Structural Insights Into Collagen-Binding By Platelet Receptor Glycoprotein VI To Be Published.
Page generated: Fri Jul 26 14:52:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy