Chlorine in PDB 5ou7: Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn

Protein crystallography data

The structure of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn, PDB code: 5ou7 was solved by L.J.Feitsma, E.G.Huizinga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 113.81 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 78.650, 44.050, 117.660, 90.00, 104.69, 90.00
R / Rfree (%) 22.1 / 26

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn (pdb code 5ou7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn, PDB code: 5ou7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 5ou7

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Chlorine binding site 1 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:58.9
occ:1.00
 O A:HOH313 2.5 52.3 1.0
O A:HOH398 2.9 36.8 1.0
CD2 A:LEU17 3.6 26.4 0.4
OH A:TYR151 3.6 22.9 1.0
OH A:TYR122 4.1 27.9 1.0
CZ A:TYR122 4.4 25.3 1.0
CD1 A:LEU17 4.4 20.4 0.6
O A:HOH330 4.5 24.2 1.0
CG A:LEU17 4.5 24.8 0.4
CD1 A:LEU17 4.6 25.8 0.4
CE1 A:TYR122 4.6 26.8 1.0
CB A:LEU17 4.6 21.2 0.6
CZ2 A:TRP130 4.7 22.8 1.0
CZ A:TYR151 4.7 20.0 1.0
CB A:LEU17 4.8 23.5 0.4
CE2 A:TYR122 4.9 26.8 1.0
OE2 A:GLU128 4.9 57.3 1.0
OE1 A:GLU128 5.0 53.8 1.0

Chlorine binding site 2 out of 14 in 5ou7

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Chlorine binding site 2 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:40.9
occ:1.00
 O A:ARG27 2.9 21.3 1.0
NE2 A:GLN29 2.9 29.4 0.5
OG A:SER9 3.0 23.6 1.0
CG A:GLN29 3.2 28.0 0.5
CB A:GLN11 3.4 23.3 0.5
CG A:GLN11 3.5 24.7 0.5
CB A:GLN11 3.5 23.8 0.5
CD A:GLN29 3.5 28.7 0.5
N A:GLN11 3.6 19.9 1.0
CB A:GLN29 3.7 29.3 0.5
CD A:GLN11 3.8 26.6 0.5
C A:ARG27 3.8 23.9 1.0
O A:SER9 3.8 20.6 1.0
C A:SER9 3.9 20.1 1.0
CG A:ARG27 4.0 28.7 0.5
N A:GLN29 4.0 24.8 1.0
CB A:SER9 4.0 21.8 1.0
CB A:GLN29 4.1 27.5 0.5
OE1 A:GLN11 4.1 30.5 0.5
N A:LEU10 4.1 19.0 1.0
CA A:GLN11 4.2 21.8 0.5
CA A:LEU10 4.2 18.6 1.0
CA A:GLN11 4.2 21.9 0.5
CB A:ARG27 4.2 26.4 0.5
C A:LEU10 4.2 19.5 1.0
CB A:ARG27 4.3 26.9 0.5
OE1 A:GLN29 4.3 36.4 0.5
NE2 A:GLN11 4.3 27.1 0.5
O A:HOH378 4.4 41.7 1.0
C A:CYS28 4.4 23.9 1.0
CG A:ARG27 4.5 29.5 0.5
CA A:GLN29 4.5 26.4 0.5
CD A:ARG27 4.5 31.1 0.5
CA A:CYS28 4.6 24.2 1.0
OE1 A:GLN11 4.6 27.0 0.5
CA A:ARG27 4.6 24.3 0.5
CA A:SER9 4.6 20.5 1.0
N A:CYS28 4.6 23.8 1.0
CA A:ARG27 4.6 24.4 0.5
CA A:GLN29 4.6 25.6 0.5
CG A:GLN11 4.7 24.1 0.5
O A:HOH301 4.7 55.6 1.0
OE1 A:GLN29 4.7 28.6 0.5
CD A:GLN11 4.8 24.6 0.5
CD A:GLN29 4.9 34.0 0.5
CG A:GLN29 4.9 31.9 0.5

Chlorine binding site 3 out of 14 in 5ou7

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Chlorine binding site 3 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:36.7
occ:1.00
 O A:HOH362 2.7 20.3 1.0
OG1 A:THR139 2.8 23.3 1.0
OG1 A:THR107 2.8 22.0 1.0
CG2 A:THR139 3.3 23.0 1.0
CB A:THR139 3.5 22.7 1.0
N A:THR107 3.7 21.6 1.0
CB A:ASP105 3.8 25.4 1.0
CA A:THR107 3.8 22.0 1.0
CB A:THR107 3.9 21.9 1.0
C A:VAL106 3.9 22.1 1.0
CA A:THR139 3.9 22.6 1.0
O A:VAL106 4.0 22.6 1.0
CA A:GLY101 4.1 22.7 1.0
OD2 A:ASP105 4.3 27.1 1.0
O A:HOH328 4.3 22.0 1.0
N A:VAL106 4.4 22.9 1.0
CG A:ASP105 4.5 29.1 1.0
C A:ASP105 4.6 23.7 1.0
CA A:VAL106 4.7 21.7 1.0
O A:HOH329 4.8 20.8 1.0
CG2 A:THR107 4.8 21.2 1.0
N A:SER102 4.8 22.4 1.0
CA A:ASP105 4.8 25.5 1.0
N A:GLY101 4.9 22.7 1.0
N A:THR139 4.9 21.9 1.0
C A:THR139 5.0 22.9 1.0
O A:ASP105 5.0 23.4 1.0

Chlorine binding site 4 out of 14 in 5ou7

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Chlorine binding site 4 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:58.6
occ:1.00
 NH2 A:ARG60 3.0 37.8 1.0
O A:VAL90 3.3 23.4 1.0
CZ A:ARG60 3.9 33.0 1.0
NE A:ARG60 4.0 30.5 1.0
C A:VAL90 4.1 24.3 1.0
CA A:VAL90 4.1 22.6 1.0
CD1 A:LEU20 4.2 23.2 1.0
O A:HOH402 4.3 49.8 1.0
O A:GLY89 4.3 23.8 1.0
CG1 A:VAL90 4.5 23.6 1.0
O A:HOH396 4.8 42.6 1.0
CB A:VAL90 5.0 22.7 1.0

Chlorine binding site 5 out of 14 in 5ou7

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Chlorine binding site 5 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:39.6
occ:1.00
 O A:PRO4 2.8 25.6 1.0
CA A:LEU5 3.6 22.6 1.0
CD A:PRO6 3.7 20.9 1.0
C A:PRO4 3.8 23.7 1.0
N A:PRO6 3.9 20.6 1.0
C A:LEU5 3.9 21.4 1.0
CG A:PRO6 4.1 20.8 1.0
N A:LEU5 4.2 23.4 1.0
CD2 A:LEU5 4.6 26.4 1.0
O A:LEU5 4.8 21.2 1.0
CB A:LEU5 4.8 23.1 1.0
CA A:PRO6 4.8 19.8 1.0

Chlorine binding site 6 out of 14 in 5ou7

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Chlorine binding site 6 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:68.0
occ:1.00
 O B:HOH339 2.3 51.7 1.0
O B:HOH382 3.6 43.2 1.0
OH B:TYR151 3.7 21.6 1.0
OH B:TYR122 3.8 26.5 1.0
CZ B:TYR122 3.9 24.8 1.0
CE1 B:TYR122 4.2 25.1 1.0
CD1 B:LEU17 4.3 19.6 0.3
CZ2 B:TRP130 4.4 22.4 1.0
CE2 B:TYR122 4.4 25.7 1.0
OE2 B:GLU128 4.7 54.8 1.0
CH2 B:TRP130 4.7 21.9 1.0
CZ B:TYR151 4.8 19.5 1.0
O B:HOH360 4.8 52.8 1.0
O B:HOH323 4.8 28.4 1.0
OE1 B:GLU128 4.8 50.7 1.0
CB B:LEU17 4.9 20.4 0.3
CB B:LEU17 4.9 23.8 0.7
CE1 B:TYR151 5.0 19.9 1.0
CD1 B:TYR122 5.0 24.4 1.0

Chlorine binding site 7 out of 14 in 5ou7

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Chlorine binding site 7 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:49.9
occ:1.00
 O B:ARG27 2.8 23.1 1.0
OG B:SER9 2.9 22.0 1.0
OE1 B:GLN29 3.0 32.4 0.5
CG B:GLN29 3.3 31.4 0.5
CD B:GLN29 3.4 33.1 0.5
CG B:GLN11 3.5 31.3 0.7
CB B:GLN11 3.6 21.9 0.3
N B:GLN11 3.6 21.6 1.0
CB B:GLN29 3.6 29.9 0.5
CB B:GLN11 3.7 27.9 0.7
O B:SER9 3.7 22.5 1.0
C B:ARG27 3.7 25.2 1.0
CB B:GLN29 3.7 29.7 0.5
CD B:GLN11 3.8 35.7 0.7
C B:SER9 3.8 20.7 1.0
CB B:SER9 3.9 21.2 1.0
N B:GLN29 3.9 24.6 1.0
N B:LEU10 4.0 20.2 1.0
OE1 B:GLN11 4.1 39.8 0.7
CA B:LEU10 4.1 20.1 1.0
OE1 B:GLN29 4.1 35.6 0.5
C B:LEU10 4.1 20.6 1.0
CA B:GLN11 4.2 21.8 0.3
CG B:ARG27 4.2 32.0 0.5
NE2 B:GLN11 4.3 38.2 0.7
CB B:ARG27 4.3 29.1 0.5
CA B:GLN11 4.3 24.2 0.7
CB B:ARG27 4.3 28.7 0.5
C B:CYS28 4.3 23.9 1.0
CA B:GLN29 4.4 27.1 0.5
CA B:GLN29 4.5 27.1 0.5
CG B:ARG27 4.5 32.6 0.5
CA B:SER9 4.5 21.1 1.0
CA B:CYS28 4.5 24.4 1.0
N B:CYS28 4.5 24.8 1.0
NE2 B:GLN29 4.5 34.5 0.5
CA B:ARG27 4.6 26.0 0.5
CA B:ARG27 4.6 25.8 0.5
NE2 B:GLN11 4.7 21.1 0.3
CG B:GLN11 4.9 21.5 0.3
CG B:GLN29 4.9 31.7 0.5
CD B:GLN29 5.0 33.6 0.5
CD B:ARG27 5.0 34.8 0.5

Chlorine binding site 8 out of 14 in 5ou7

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Chlorine binding site 8 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:39.5
occ:1.00
 OG1 B:THR107 2.7 21.4 1.0
OG1 B:THR139 2.8 25.5 1.0
O B:HOH363 2.9 21.3 1.0
CG2 B:THR139 3.3 24.4 1.0
CB B:THR139 3.5 23.5 1.0
N B:THR107 3.6 21.2 1.0
CA B:THR107 3.7 21.5 1.0
CB B:THR107 3.7 21.0 1.0
C B:VAL106 3.7 21.6 1.0
CB B:ASP105 3.8 25.9 1.0
O B:VAL106 3.8 24.0 1.0
CA B:THR139 3.9 23.3 1.0
CA B:GLY101 4.0 23.0 1.0
N B:VAL106 4.4 22.3 1.0
OD2 B:ASP105 4.4 28.5 1.0
C B:ASP105 4.5 24.4 1.0
CA B:VAL106 4.6 21.8 1.0
CG B:ASP105 4.6 28.7 1.0
CG2 B:THR107 4.6 21.0 1.0
O B:HOH331 4.7 21.9 1.0
N B:SER102 4.8 24.0 1.0
N B:GLY101 4.8 23.1 1.0
CA B:ASP105 4.8 25.7 1.0
N B:THR139 4.8 21.6 1.0
C B:THR139 4.9 23.4 1.0
O B:ASP105 4.9 24.1 1.0
O B:ILE138 4.9 21.6 1.0
C B:GLY101 5.0 24.3 1.0
N B:VAL140 5.0 22.8 1.0

Chlorine binding site 9 out of 14 in 5ou7

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Chlorine binding site 9 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:59.4
occ:1.00
 NH2 B:ARG60 2.8 36.6 1.0
O B:VAL90 3.2 25.0 1.0
CZ B:ARG60 3.7 31.7 1.0
NE B:ARG60 3.7 28.4 1.0
CA B:VAL90 3.8 23.1 1.0
C B:VAL90 3.8 25.6 1.0
CD1 B:LEU20 3.9 23.3 1.0
O B:GLY89 4.0 24.6 1.0
CG1 B:VAL90 4.2 25.1 1.0
O B:HOH391 4.5 44.7 1.0
CB B:VAL90 4.6 23.9 1.0
N B:VAL90 4.8 22.1 1.0
C B:GLY89 4.9 22.7 1.0
NH1 B:ARG60 4.9 32.5 1.0

Chlorine binding site 10 out of 14 in 5ou7

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Chlorine binding site 10 out of 14 in the Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Glycoprotein VI Loop Truncation Mutant Pavs- Papykn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:40.4
occ:1.00
 O B:PRO4 2.7 24.2 1.0
CD B:PRO6 3.5 21.9 1.0
CA B:LEU5 3.7 22.1 1.0
C B:PRO4 3.8 23.1 1.0
N B:PRO6 3.8 21.5 1.0
C B:LEU5 3.9 21.6 1.0
CG B:PRO6 4.0 21.4 1.0
N B:LEU5 4.2 22.0 1.0
CD2 B:LEU5 4.7 23.9 1.0
CA B:PRO6 4.8 21.0 1.0
O B:LEU5 4.8 21.8 1.0
CB B:LEU5 4.8 21.8 1.0

Reference:

L.J.Feitsma, T.H.C.Brondijk, G.Jarvis, D.Hagemans, D.Bihan, N.Jerah, M.Versteeg, R.W.Farndale, E.G.Huizinga. Structural Insights Into Collagen-Binding By Platelet Receptor Glycoprotein VI To Be Published.
Page generated: Sat Dec 12 12:14:03 2020

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