Atomistry » Chlorine » PDB 5oul-5p9n » 5oy7
Atomistry »
  Chlorine »
    PDB 5oul-5p9n »
      5oy7 »

Chlorine in PDB 5oy7: Structure of the 4_601_157 Tetranucleosome (P1 Form)

Protein crystallography data

The structure of Structure of the 4_601_157 Tetranucleosome (P1 Form), PDB code: 5oy7 was solved by B.Ekundayo, T.J.Richmond, T.Schalch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 111.41 / 5.77
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.624, 161.465, 227.915, 78.94, 83.86, 83.74
R / Rfree (%) 21.9 / 23.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the 4_601_157 Tetranucleosome (P1 Form) (pdb code 5oy7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Structure of the 4_601_157 Tetranucleosome (P1 Form), PDB code: 5oy7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 1 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Cl201

b:0.1
occ:0.00
 N O:GLY46 2.8 0.3 1.0
N O:ALA45 3.2 0.9 1.0
CA O:GLY46 3.4 0.3 1.0
N P:SER88 3.4 0.2 1.0
N O:ALA47 3.4 0.8 1.0
CA O:GLY44 3.4 0.9 1.0
OG P:SER88 3.5 0.2 1.0
C O:GLY44 3.6 0.9 1.0
CA P:THR87 3.6 0.3 1.0
CB P:THR87 3.7 0.3 1.0
C O:GLY46 3.9 0.3 1.0
C O:ALA45 3.9 0.9 1.0
C P:THR87 4.0 0.3 1.0
CA O:ALA45 4.1 0.9 1.0
CG2 P:THR87 4.2 0.3 1.0
OP1 g:DT585 4.3 0.2 1.0
CB P:SER88 4.4 0.2 1.0
CB O:ALA47 4.5 0.8 1.0
CA P:SER88 4.5 0.2 1.0
CA O:ALA47 4.5 0.8 1.0
N O:GLY44 4.6 0.9 1.0
O O:GLY44 4.6 0.9 1.0
OG1 P:THR87 4.9 0.3 1.0
N P:THR87 4.9 0.3 1.0

Chlorine binding site 2 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 2 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1101

b:0.2
occ:0.00
 N C:GLY46 3.1 0.2 1.0
N C:ALA45 3.4 0.7 1.0
CA C:GLY44 3.4 0.9 1.0
N D:SER88 3.5 0.9 1.0
C C:GLY44 3.6 0.9 1.0
CA C:GLY46 3.7 0.2 1.0
CA D:THR87 3.7 0.3 1.0
CB D:THR87 3.7 0.3 1.0
OP1 h:DG-353 3.8 0.5 1.0
N C:ALA47 3.9 0.4 1.0
C C:ALA45 4.1 0.7 1.0
C D:THR87 4.1 0.3 1.0
CA C:ALA45 4.3 0.7 1.0
C C:GLY46 4.3 0.2 1.0
O C:GLY44 4.4 0.9 1.0
CB D:SER88 4.5 0.9 1.0
OG D:SER88 4.5 0.9 1.0
N C:GLY44 4.6 0.9 1.0
CA D:SER88 4.6 0.9 1.0
CG2 D:THR87 4.6 0.3 1.0
OG1 D:THR87 4.7 0.3 1.0
CB C:ALA47 4.8 0.4 1.0
CA C:ALA47 4.9 0.4 1.0
N D:THR87 5.0 0.3 1.0
O D:ILE86 5.0 0.1 1.0

Chlorine binding site 3 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 3 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl201

b:0.7
occ:0.00
 N G:GLY46 2.8 0.2 1.0
N G:ALA45 3.2 0.6 1.0
CA G:GLY46 3.4 0.2 1.0
N H:SER88 3.4 0.9 1.0
N G:ALA47 3.4 0.4 1.0
CA G:GLY44 3.4 0.8 1.0
OG H:SER88 3.5 0.9 1.0
C G:GLY44 3.6 0.8 1.0
CA H:THR87 3.6 0.8 1.0
CB H:THR87 3.7 0.8 1.0
C G:GLY46 3.9 0.2 1.0
C G:ALA45 3.9 0.6 1.0
C H:THR87 4.0 0.8 1.0
CA G:ALA45 4.1 0.6 1.0
CG2 H:THR87 4.2 0.8 1.0
OP1 g:DT429 4.3 0.8 1.0
CB H:SER88 4.4 0.9 1.0
CB G:ALA47 4.5 0.4 1.0
CA H:SER88 4.5 0.9 1.0
CA G:ALA47 4.5 0.4 1.0
N G:GLY44 4.6 0.8 1.0
O G:GLY44 4.6 0.8 1.0
OG1 H:THR87 4.9 0.8 1.0
N H:THR87 4.9 0.8 1.0

Chlorine binding site 4 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 4 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl1101

b:0.8
occ:0.00
 N K:GLY46 3.1 1.0 1.0
N K:ALA45 3.4 0.1 1.0
CA K:GLY44 3.4 0.2 1.0
N L:SER88 3.5 0.5 1.0
C K:GLY44 3.6 0.2 1.0
CA K:GLY46 3.7 1.0 1.0
CA L:THR87 3.7 0.8 1.0
CB L:THR87 3.7 0.8 1.0
OP1 h:DG-509 3.8 0.6 1.0
N K:ALA47 3.9 0.2 1.0
C K:ALA45 4.1 0.1 1.0
C L:THR87 4.1 0.8 1.0
CA K:ALA45 4.3 0.1 1.0
C K:GLY46 4.3 1.0 1.0
O K:GLY44 4.4 0.2 1.0
OG L:SER88 4.5 0.5 1.0
CB L:SER88 4.5 0.5 1.0
CA L:SER88 4.6 0.5 1.0
N K:GLY44 4.6 0.2 1.0
CG2 L:THR87 4.6 0.8 1.0
OG1 L:THR87 4.7 0.8 1.0
CB K:ALA47 4.8 0.2 1.0
CA K:ALA47 4.9 0.2 1.0
N L:THR87 5.0 0.8 1.0
O L:ILE86 5.0 0.2 1.0

Chlorine binding site 5 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 5 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl1101

b:0.8
occ:0.00
 N S:GLY46 3.1 0.3 1.0
N S:ALA45 3.4 0.9 1.0
CA S:GLY44 3.4 0.8 1.0
N T:SER88 3.5 0.7 1.0
C S:GLY44 3.6 0.8 1.0
CA S:GLY46 3.7 0.3 1.0
CA T:THR87 3.7 0.4 1.0
CB T:THR87 3.7 0.4 1.0
OP1 h:DG-197 3.8 0.7 1.0
N S:ALA47 3.9 0.5 1.0
C S:ALA45 4.1 0.9 1.0
C T:THR87 4.1 0.4 1.0
CA S:ALA45 4.3 0.9 1.0
C S:GLY46 4.3 0.3 1.0
O S:GLY44 4.4 0.8 1.0
CB T:SER88 4.5 0.7 1.0
OG T:SER88 4.5 0.7 1.0
N S:GLY44 4.6 0.8 1.0
CA T:SER88 4.6 0.7 1.0
CG2 T:THR87 4.6 0.4 1.0
OG1 T:THR87 4.7 0.4 1.0
CB S:ALA47 4.8 0.5 1.0
CA S:ALA47 4.9 0.5 1.0
N T:THR87 5.0 0.4 1.0
O T:ILE86 5.0 0.0 1.0

Chlorine binding site 6 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 6 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Cl201

b:0.8
occ:0.00
 N W:GLY46 2.8 0.9 1.0
N W:ALA45 3.2 0.5 1.0
CA W:GLY46 3.4 0.9 1.0
N X:SER88 3.4 0.5 1.0
N W:ALA47 3.4 0.4 1.0
CA W:GLY44 3.4 0.2 1.0
OG X:SER88 3.5 0.5 1.0
C W:GLY44 3.6 0.2 1.0
CA X:THR87 3.6 0.2 1.0
CB X:THR87 3.7 0.2 1.0
C W:GLY46 3.9 0.9 1.0
C W:ALA45 3.9 0.5 1.0
C X:THR87 4.0 0.2 1.0
CA W:ALA45 4.1 0.5 1.0
CG2 X:THR87 4.2 0.2 1.0
OP1 g:DT273 4.3 0.3 1.0
CB X:SER88 4.4 0.5 1.0
CB W:ALA47 4.5 0.4 1.0
CA X:SER88 4.5 0.5 1.0
CA W:ALA47 4.5 0.4 1.0
N W:GLY44 4.6 0.2 1.0
O W:GLY44 4.6 0.2 1.0
OG1 X:THR87 4.9 0.2 1.0
N X:THR87 4.9 0.2 1.0

Chlorine binding site 7 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 7 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl1101

b:0.2
occ:0.00
 N a:GLY46 3.1 0.1 1.0
N a:ALA45 3.4 0.7 1.0
CA a:GLY44 3.4 0.3 1.0
N b:SER88 3.5 0.8 1.0
C a:GLY44 3.6 0.3 1.0
CA a:GLY46 3.7 0.1 1.0
CA b:THR87 3.7 0.8 1.0
CB b:THR87 3.7 0.8 1.0
OP1 h:DG-41 3.8 0.7 1.0
N a:ALA47 3.9 0.3 1.0
C a:ALA45 4.1 0.7 1.0
C b:THR87 4.1 0.8 1.0
CA a:ALA45 4.3 0.7 1.0
C a:GLY46 4.3 0.1 1.0
O a:GLY44 4.4 0.3 1.0
CB b:SER88 4.5 0.8 1.0
OG b:SER88 4.5 0.8 1.0
N a:GLY44 4.6 0.3 1.0
CA b:SER88 4.6 0.8 1.0
CG2 b:THR87 4.6 0.8 1.0
OG1 b:THR87 4.7 0.8 1.0
CB a:ALA47 4.8 0.3 1.0
CA a:ALA47 4.9 0.3 1.0
N b:THR87 5.0 0.8 1.0
O b:ILE86 5.0 0.5 1.0

Chlorine binding site 8 out of 8 in 5oy7

Go back to Chlorine Binding Sites List in 5oy7
Chlorine binding site 8 out of 8 in the Structure of the 4_601_157 Tetranucleosome (P1 Form)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of the 4_601_157 Tetranucleosome (P1 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Cl201

b:0.8
occ:0.00
 N e:GLY46 2.8 0.0 1.0
N e:ALA45 3.2 0.8 1.0
CA e:GLY46 3.4 0.0 1.0
N f:SER88 3.4 0.4 1.0
N e:ALA47 3.4 0.1 1.0
CA e:GLY44 3.4 0.7 1.0
OG f:SER88 3.5 0.4 1.0
C e:GLY44 3.6 0.7 1.0
CA f:THR87 3.6 0.8 1.0
CB f:THR87 3.7 0.8 1.0
C e:GLY46 3.9 0.0 1.0
C e:ALA45 3.9 0.8 1.0
C f:THR87 4.0 0.8 1.0
CA e:ALA45 4.1 0.8 1.0
CG2 f:THR87 4.2 0.8 1.0
OP1 g:DT117 4.3 0.3 1.0
CB f:SER88 4.4 0.4 1.0
CB e:ALA47 4.5 0.1 1.0
CA f:SER88 4.5 0.4 1.0
CA e:ALA47 4.5 0.1 1.0
N e:GLY44 4.6 0.7 1.0
O e:GLY44 4.6 0.7 1.0
OG1 f:THR87 4.9 0.8 1.0
N f:THR87 4.9 0.8 1.0

Reference:

B.Ekundayo, T.J.Richmond, T.Schalch. Capturing Structural Heterogeneity in Chromatin Fibers. J. Mol. Biol. V. 429 3031 2017.
ISSN: ESSN 1089-8638
PubMed: 28893533
DOI: 10.1016/J.JMB.2017.09.002
Page generated: Sat Dec 12 12:14:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy