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Chlorine in PDB 5oyc: GH5 Endo-Xyloglucanase From Cellvibrio Japonicus

Enzymatic activity of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus

All present enzymatic activity of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus:
3.2.1.151;

Protein crystallography data

The structure of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus, PDB code: 5oyc was solved by M.Attia, C.E.Nelson, W.A.Offen, N.Jain, J.G.Gardner, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.45 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.004, 96.434, 158.954, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 20.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus (pdb code 5oyc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus, PDB code: 5oyc:

Chlorine binding site 1 out of 1 in 5oyc

Go back to Chlorine Binding Sites List in 5oyc
Chlorine binding site 1 out of 1 in the GH5 Endo-Xyloglucanase From Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of GH5 Endo-Xyloglucanase From Cellvibrio Japonicus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl510

b:74.5
occ:1.00
N B:ASN437 3.1 30.5 1.0
O1 B:GOL506 3.6 64.1 0.8
CA B:GLY436 3.7 32.2 1.0
C B:GLY436 3.9 34.4 1.0
CB B:ASN437 4.0 35.0 1.0
CA B:ASN437 4.0 30.8 1.0
N B:ASP438 4.3 32.6 1.0
OD1 B:ASP438 4.3 44.4 1.0
O B:GLY435 4.4 37.7 1.0
CG B:ASN437 4.5 38.7 1.0
C B:ASN437 4.5 36.5 1.0
CG B:ASP438 4.5 44.3 1.0
O B:HOH637 4.8 42.4 1.0
CB B:ASP438 4.8 39.3 1.0
OD1 B:ASN437 4.8 38.3 1.0
N B:GLY436 4.9 28.9 1.0

Reference:

M.A.Attia, C.E.Nelson, W.A.Offen, N.Jain, G.J.Davies, J.G.Gardner, H.Brumer. In Vitro and in Vivo Characterization of Threecellvibrio Japonicusglycoside Hydrolase Family 5 Members Reveals Potent Xyloglucan Backbone-Cleaving Functions. Biotechnol Biofuels V. 11 45 2018.
ISSN: ESSN 1754-6834
PubMed: 29467823
DOI: 10.1186/S13068-018-1039-6
Page generated: Fri Jul 26 14:59:18 2024

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