Atomistry » Chlorine » PDB 5oum-5p9o » 5p8z
Atomistry »
  Chlorine »
    PDB 5oum-5p9o »
      5p8z »

Chlorine in PDB 5p8z: Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A

Enzymatic activity of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A

All present enzymatic activity of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A:
2.1.1.6;

Protein crystallography data

The structure of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A, PDB code: 5p8z was solved by A.Ehler, C.Lerner, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.52 / 1.42
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.897, 54.136, 81.231, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.8

Other elements in 5p8z:

The structure of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A (pdb code 5p8z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A, PDB code: 5p8z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5p8z

Go back to Chlorine Binding Sites List in 5p8z
Chlorine binding site 1 out of 2 in the Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:7.7
occ:1.00
 O A:HOH410 3.1 11.2 1.0
O A:HOH465 3.1 7.1 1.0
OG A:SER72 3.2 8.9 0.5
N A:VAL42 3.3 7.8 1.0
N A:SER72 3.4 7.5 1.0
OG A:SER72 3.4 8.3 0.5
CA A:ASN41 3.5 7.4 1.0
CB A:SER72 3.6 8.4 0.5
CB A:SER72 3.7 8.3 0.5
CB A:TYR71 3.7 7.4 1.0
CG2 A:VAL42 3.8 9.6 1.0
C A:ASN41 3.9 7.8 1.0
CB A:ASN41 4.1 7.5 1.0
CA A:SER72 4.1 8.0 0.5
OD2 A:ASP141 4.1 7.5 1.0
CA A:SER72 4.1 8.0 0.5
CD2 A:TYR71 4.2 7.9 1.0
C A:TYR71 4.2 7.6 1.0
O A:ALA67 4.2 7.9 1.0
N A:TYR71 4.2 6.9 1.0
CA A:TYR71 4.3 7.5 1.0
O A:HOH430 4.3 7.1 1.0
CB A:VAL42 4.4 8.6 1.0
O A:HOH459 4.4 10.0 1.0
ND2 A:ASN41 4.4 7.3 1.0
O A:MET40 4.4 8.1 1.0
CG A:TYR71 4.4 7.6 1.0
CA A:VAL42 4.4 8.1 1.0
N A:ASN41 4.7 7.1 1.0
CG A:ASN41 4.8 8.4 1.0
CB A:TYR68 4.9 7.8 1.0

Chlorine binding site 2 out of 2 in 5p8z

Go back to Chlorine Binding Sites List in 5p8z
Chlorine binding site 2 out of 2 in the Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Humanized Rat Catechol O-Methyltransferase in Complex with 5-(4- Fluorophenyl)-2,3-Dihydroxy-N-(4-Thieno[3,2-C]Pyridin-2-Ylbutyl) Benzamide at 1.42A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:14.8
occ:1.00
 O A:HOH548 2.9 15.0 1.0
O A:HOH623 3.2 25.2 1.0
O A:HOH550 3.3 14.8 1.0
N A:TYR200 3.3 8.5 1.0
N A:ASP44 3.5 9.7 1.0
N A:ALA45 3.5 9.4 1.0
O A:HOH476 3.6 10.3 1.0
CA A:GLU199 4.0 7.9 1.0
CB A:ALA45 4.1 11.5 1.0
CA A:TYR200 4.1 9.3 1.0
CD1 A:TYR200 4.1 10.0 1.0
C A:GLY43 4.1 8.7 1.0
CA A:GLY43 4.1 8.5 1.0
C A:GLU199 4.2 8.5 1.0
CA A:ASP44 4.3 10.1 1.0
C A:ASP44 4.4 9.7 1.0
CE1 A:TYR200 4.4 10.4 1.0
CA A:ALA45 4.4 10.1 1.0
O A:HOH494 4.4 24.5 1.0
CB A:ASP44 4.5 10.8 1.0
O A:LEU198 4.7 8.1 1.0
CB A:GLU199 4.7 8.1 1.0
CG A:TYR200 4.7 9.4 1.0
N A:GLU199 5.0 7.4 1.0

Reference:

C.Lerner, M.G.Rudolph. Crystal Structure of A Comt Complex To Be Published.
Page generated: Fri Jul 26 15:00:00 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy