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Chlorine in PDB 5paa: Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine

Enzymatic activity of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine

All present enzymatic activity of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine:
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine, PDB code: 5paa was solved by M.Stihle, A.Mayweg, S.Roever, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.67 / 1.98
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.298, 95.298, 116.041, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.5

Other elements in 5paa:

The structure of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine (pdb code 5paa). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine, PDB code: 5paa:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5paa

Go back to Chlorine Binding Sites List in 5paa
Chlorine binding site 1 out of 4 in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:63.6
occ:1.00
 O C:HOH696 3.5 54.3 1.0
O C:HOH770 3.5 50.6 1.0
N C:GLU454 3.7 34.1 1.0
CA C:SER453 4.1 35.4 1.0
CB C:SER453 4.2 35.6 1.0
C C:SER453 4.4 34.5 1.0
CB C:GLU454 4.5 34.4 1.0
CG C:GLU454 4.7 32.9 1.0
CA C:GLU454 4.7 34.7 1.0
O C:HOH717 4.9 56.0 1.0

Chlorine binding site 2 out of 4 in 5paa

Go back to Chlorine Binding Sites List in 5paa
Chlorine binding site 2 out of 4 in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl503

b:67.2
occ:1.00
 NH2 C:ARG262 3.5 59.5 1.0
O C:HOH754 3.6 48.7 1.0
N C:VAL459 3.7 38.4 1.0
CA C:GLY458 3.9 39.2 0.5
CA C:GLY458 3.9 39.2 0.5
CG2 C:VAL459 4.1 38.6 1.0
C C:GLY458 4.3 39.0 0.5
C C:GLY458 4.4 39.0 0.5
CG C:ARG262 4.5 50.5 1.0
CB C:VAL459 4.6 38.3 1.0
CD C:ARG262 4.6 52.1 1.0
CZ C:ARG262 4.7 58.0 1.0
CA C:VAL459 4.8 38.2 1.0
CB C:TRP261 4.9 49.7 1.0
N C:GLY458 5.0 39.3 0.5
N C:GLY458 5.0 39.3 0.5

Chlorine binding site 3 out of 4 in 5paa

Go back to Chlorine Binding Sites List in 5paa
Chlorine binding site 3 out of 4 in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl504

b:79.5
occ:1.00
 NH2 C:ARG284 3.5 36.3 0.5
NH1 C:ARG284 3.5 36.4 0.5
NE C:ARG262 3.9 55.6 1.0
CZ C:ARG284 4.0 36.0 0.5
CD C:ARG262 4.6 52.1 1.0
NH1 C:ARG262 4.7 58.3 1.0
CZ C:ARG262 4.8 58.0 1.0
CB C:ARG262 4.9 48.9 1.0

Chlorine binding site 4 out of 4 in 5paa

Go back to Chlorine Binding Sites List in 5paa
Chlorine binding site 4 out of 4 in the Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Factor Viia in Complex with Cyclohexylmethanamine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl505

b:70.9
occ:1.00
 NH1 C:ARG262 3.7 58.3 1.0
O C:HOH759 4.1 50.0 1.0
NH2 C:ARG262 4.2 59.5 1.0
N C:GLY458 4.4 39.3 0.5
N C:GLY458 4.4 39.3 0.5
CZ C:ARG262 4.4 58.0 1.0
CA C:PRO457 4.7 39.8 1.0
CB C:PRO457 4.9 40.0 1.0

Reference:

A.Mayweg, S.Roever, M.G.Rudolph. Crystal Structure of A Factor Viia Complex To Be Published.
Page generated: Fri Jul 26 15:06:24 2024

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