Atomistry » Chlorine » PDB 5pb5-5qa5 » 5q0h
Atomistry »
  Chlorine »
    PDB 5pb5-5qa5 »
      5q0h »

Chlorine in PDB 5q0h: Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate

Enzymatic activity of Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate

All present enzymatic activity of Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate:
3.4.21.27;

Protein crystallography data

The structure of Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate, PDB code: 5q0h was solved by S.Sheriff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.83 / 2.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.690, 78.690, 105.990, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 21

Other elements in 5q0h:

The structure of Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate (pdb code 5q0h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate, PDB code: 5q0h:

Chlorine binding site 1 out of 1 in 5q0h

Go back to Chlorine Binding Sites List in 5q0h
Chlorine binding site 1 out of 1 in the Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Factor Xia in Complex with the Inhibitor Methyl [(4R,5E,8S)-11-Chloro- 8-[(2,6-Difluoro-4-Methylbenzene-1-Carbonyl)Amino]-4-Methyl-2-Oxo-1, 3,4,7,8,10-Hexahydro-2H-12,9-(Azeno)-1,10-Benzodiazacyclotetradecin- 15-Yl]Carbamate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:27.8
occ:1.00
 CL1 A:9F1301 0.0 27.8 1.0
C12 A:9F1301 1.7 24.9 1.0
N11 A:9F1301 2.7 23.1 1.0
C13 A:9F1301 2.8 23.0 1.0
H46 A:9F1301 3.0 23.1 0.0
H43 A:9F1301 3.0 23.9 0.0
C5 A:9F1301 3.4 23.6 1.0
C6 A:9F1301 3.5 23.8 1.0
CG A:LYS192 3.6 23.9 1.0
CB A:LYS192 3.7 20.0 1.0
C3 A:9F1301 3.8 24.7 1.0
N14 A:9F1301 3.9 23.0 1.0
O A:HOH479 4.1 40.3 1.0
CD A:LYS192 4.1 32.9 1.0
CE A:LYS192 4.2 35.1 1.0
O25 A:9F1301 4.3 31.2 1.0
O A:HOH519 4.4 32.8 1.0
O A:HOH451 4.5 43.3 1.0
OH A:TYR143 4.6 29.1 1.0
C10 A:9F1301 4.6 24.3 1.0
C7 A:9F1301 4.7 26.3 1.0
CA A:LYS192 4.7 20.1 1.0
CZ A:TYR143 4.9 24.6 1.0
NZ A:LYS192 5.0 53.7 1.0

Reference:

J.R.Corte, W.Yang, T.Fang, Y.Wang, H.Osuna, A.Lai, W.R.Ewing, K.A.Rossi, J.E.Myers, S.Sheriff, Z.Lou, J.J.Zheng, T.W.Harper, J.M.Bozarth, Y.Wu, J.M.Luettgen, D.A.Seiffert, M.L.Quan, R.R.Wexler, P.Y.S.Lam. Macrocyclic Inhibitors of Factor Xia: Discovery of Alkyl-Substituted Macrocyclic Amide Linkers with Improved Potency. Bioorg. Med. Chem. Lett. V. 27 3833 2017.
ISSN: ESSN 1464-3405
PubMed: 28687203
DOI: 10.1016/J.BMCL.2017.06.058
Page generated: Fri Jul 26 15:14:13 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy