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Chlorine in PDB 5qgz: Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161, PDB code: 5qgz was solved by T.Krojer, R.Talon, M.Fairhead, L.Diaz Saez, A.R.Bradley, A.Aimon, P.Collins, J.Brandao-Neto, A.Douangamath, G.F.Ruda, T.Szommer, V.Srikannathasan, J.Elkins, J.Spencer, N.London, A.Nelson, P.E.Brennan, K.Huber, C.Bountra, C.H.Arrowsmith, A.Edwards, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 107.58 / 1.65
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 123.957, 123.957, 40.872, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 21.1

Other elements in 5qgz:

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161 also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161 (pdb code 5qgz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161, PDB code: 5qgz:

Chlorine binding site 1 out of 1 in 5qgz

Go back to Chlorine Binding Sites List in 5qgz
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT7 in Complex with NUOOA000161 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:34.3
occ:0.45
CL1 A:H1J305 0.0 34.3 0.5
C7 A:H1J305 1.7 31.9 0.5
C8 A:H1J305 2.7 31.0 0.5
C6 A:H1J305 2.7 29.4 0.5
OE2 A:GLU97 3.7 34.8 1.0
CB A:GLU141 3.7 38.0 1.0
CD1 A:LEU65 3.7 63.3 1.0
CG A:GLU141 3.7 43.4 1.0
C5 A:H1J305 4.0 30.8 0.5
C3 A:H1J305 4.0 31.8 0.5
CD A:GLU141 4.0 45.9 1.0
NH1 A:ARG61 4.2 49.4 1.0
CD A:GLU97 4.2 33.0 1.0
O A:GLU141 4.3 31.6 1.0
CG A:GLU97 4.3 26.9 1.0
CA A:GLU141 4.4 33.9 1.0
OE2 A:GLU141 4.4 48.5 1.0
C4 A:H1J305 4.5 29.1 0.5
OE1 A:GLU141 4.5 52.4 1.0
C A:GLU141 4.7 32.4 1.0
CD2 A:LEU65 4.7 62.6 1.0
CZ A:ARG61 4.8 49.3 1.0
CG A:LEU65 4.8 65.2 1.0
O1 A:H1J305 4.9 37.8 0.5
NH2 A:ARG61 5.0 54.1 1.0

Reference:

T.Krojer, R.Talon, M.Fairhead, L.Diaz Saez, A.R.Bradley, A.Aimon, P.Collins, J.Brandao-Neto, A.Douangamath, G.F.Ruda, T.Szommer, V.Srikannathasan, J.Elkins, J.Spencer, N.London, A.Nelson, P.E.Brennan, K.Huber, C.Bountra, C.H.Arrowsmith, A.Edwards, F.Von Delft. Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) To Be Published.
Page generated: Fri Jul 26 15:39:30 2024

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