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Chlorine in PDB 5qjf: Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517

Enzymatic activity of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517

All present enzymatic activity of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517:
2.7.7.96; 3.6.1.13; 3.6.1.58;

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517, PDB code: 5qjf was solved by Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.31 / 1.63
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.388, 59.416, 79.923, 79.85, 82.34, 76.55
R / Rfree (%) 21.4 / 24.9

Other elements in 5qjf:

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517 also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517 (pdb code 5qjf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517, PDB code: 5qjf:

Chlorine binding site 1 out of 1 in 5qjf

Go back to Chlorine Binding Sites List in 5qjf
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z52425517 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:70.6
occ:1.00
CG2 B:THR145 4.1 31.9 1.0
ND1 A:HIS206 4.2 37.9 1.0
CG A:HIS206 4.3 33.1 1.0
CG2 B:VAL67 4.4 37.3 1.0
CE1 A:HIS206 4.4 33.6 1.0
CG2 B:THR147 4.4 41.1 1.0
NE2 A:HIS206 4.6 38.8 1.0
CD2 A:HIS206 4.6 29.1 1.0
CB A:HIS206 4.8 29.6 1.0
CB B:VAL67 4.8 34.8 1.0
CG1 B:VAL67 4.9 32.8 1.0

Reference:

Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft. Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) To Be Published.
Page generated: Fri Jul 26 15:48:39 2024

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