Atomistry » Chlorine » PDB 5qjg-5qs8 » 5qjx
Atomistry »
  Chlorine »
    PDB 5qjg-5qs8 »
      5qjx »

Chlorine in PDB 5qjx: Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778

Enzymatic activity of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778

All present enzymatic activity of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778:
2.7.7.96; 3.6.1.13; 3.6.1.58;

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778, PDB code: 5qjx was solved by Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.96 / 1.73
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.520, 59.520, 80.620, 79.68, 82.36, 76.36
R / Rfree (%) 22 / 25.6

Other elements in 5qjx:

The structure of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778 (pdb code 5qjx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778, PDB code: 5qjx:

Chlorine binding site 1 out of 1 in 5qjx

Go back to Chlorine Binding Sites List in 5qjx
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) -- Crystal Structure of NUDT5 in Complex with Z2856434778 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:69.0
occ:1.00
CG2 B:THR145 3.7 26.4 1.0
CG2 B:THR147 4.0 35.5 1.0
CG2 B:VAL67 4.2 34.1 1.0
ND1 A:HIS206 4.3 41.5 1.0
CE1 A:HIS206 4.3 34.0 1.0
CG A:HIS206 4.3 33.1 1.0
NE2 A:HIS206 4.4 36.8 1.0
CD2 A:HIS206 4.5 31.4 1.0
CB B:VAL67 4.7 28.9 1.0
CG1 B:VAL67 4.8 30.1 1.0
CB A:HIS206 4.9 30.5 1.0
CB B:ALA124 4.9 37.2 1.0

Reference:

Y.Dubianok, P.Collins, T.Krojer, N.Wright, C.Strain-Damerell, N.Burgess-Brown, C.Bountra, C.H.Arrowsmith, A.Edwards, K.Huber, F.Von Delft. Pandda Analysis Group Deposition of Models with Modelled Events (E.G. Bound Ligands) To Be Published.
Page generated: Sat Dec 12 12:18:05 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy