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Chlorine in PDB 5qp9: Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060:
3.6.1.62;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060, PDB code: 5qp9 was solved by E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.47 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.406, 60.406, 65.580, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060 (pdb code 5qp9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060, PDB code: 5qp9:

Chlorine binding site 1 out of 1 in 5qp9

Go back to Chlorine Binding Sites List in 5qp9
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z100435060 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:38.3
occ:0.44
 CL1 A:LJD306 0.0 38.3 0.4
C10 A:LJD306 1.7 35.7 0.4
C9 A:LJD306 2.7 35.3 0.4
C11 A:LJD306 2.7 35.9 0.4
O A:HOH402 2.8 44.9 1.0
OE2 A:GLU148 3.4 41.4 1.0
CD A:GLU148 3.5 37.8 1.0
CD1 A:ILE194 3.7 26.0 1.0
CG A:GLU148 3.8 30.8 1.0
C8 A:LJD306 4.0 34.9 0.4
C12 A:LJD306 4.0 35.0 0.4
OE1 A:GLU148 4.0 31.1 1.0
NZ A:LYS121 4.2 59.3 1.0
OE1 A:GLU193 4.2 57.7 1.0
O A:HOH404 4.4 49.0 1.0
CB A:GLU193 4.4 41.1 1.0
C7 A:LJD306 4.5 37.8 0.4
CD A:LYS121 4.6 43.8 1.0
CG1 A:ILE194 4.6 26.0 1.0
O A:GLU193 4.6 28.8 1.0
O A:LYS128 4.8 28.1 1.0

Reference:

E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Sat Jul 12 07:44:45 2025

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