Chlorine in PDB 5rfh: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277, PDB code: 5rfh was solved by D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Strain-Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brandao-Neto, A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.69 / 1.58
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	112.297, 52.885, 44.537, 90.00, 103.11, 90.00
R / Rfree (%)	18.9 / 23.7

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277 (pdb code 5rfh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277, PDB code: 5rfh:

Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Pcm-0102277 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:33.0 occ:0.48 CL A:T6Y404 0.0 33.0 0.5 C8 A:T6Y404 1.7 28.5 0.5 C7 A:T6Y404 2.8 27.2 0.5 S A:T6Y404 3.0 28.2 0.5 O A:CYS44 3.5 25.7 0.5 C A:THR45 3.7 32.0 0.5 CB A:THR24 3.8 26.6 0.5 O A:THR45 3.9 31.9 0.5 OG1 A:THR24 3.9 26.8 0.5 C6 A:T6Y404 4.0 26.8 0.5 N A:SER46 4.0 34.8 0.5 CA A:THR45 4.0 29.9 0.5 O A:THR24 4.0 28.6 0.5 C5 A:T6Y404 4.2 25.5 0.5 C A:CYS44 4.2 25.5 0.5 N A:THR45 4.5 27.8 0.5 CA A:SER46 4.6 37.1 0.5 CG2 A:THR24 4.6 26.6 0.5 C A:THR24 4.8 28.8 0.5 CA A:THR24 4.8 27.3 0.5

D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Strain-Damerell, E.Resnick, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brandao-Neto, A.Carbery, L.Dunnett, R.Skyner, M.Snee, N.London, M.A.Walsh, F.Von Delft. Pandda Analysis Group Deposition of Sars-Cov-2 Mainprotease Fragment Screen To Be Published.