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Chlorine in PDB 5rud: Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114

Enzymatic activity of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114

All present enzymatic activity of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114:
3.4.19.12;

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114, PDB code: 5rud was solved by G.J.Correy, I.D.Young, M.C.Thompson, J.S.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.71 / 1.00
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.784, 88.784, 39.513, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 17.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114 (pdb code 5rud). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114, PDB code: 5rud:

Chlorine binding site 1 out of 1 in 5rud

Go back to Chlorine Binding Sites List in 5rud
Chlorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with ZINC000008615114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:30.3
occ:0.55
CL1 A:2D0201 0.0 30.3 0.6
C3 A:2D0201 1.8 31.7 0.6
C5 A:2D0201 2.7 31.8 0.6
C1 A:2D0201 2.7 33.0 0.6
H2 A:2D0201 2.8 38.1 0.6
N7 A:2D0201 3.1 33.8 0.6
HA2 A:GLY48 3.2 20.7 1.0
HB2 A:ALA52 3.4 15.4 1.0
O A:HOH302 3.4 26.5 1.0
O A:GLY48 3.4 17.3 1.0
C A:GLY48 3.6 16.5 1.0
CA A:GLY48 3.7 17.2 1.0
H A:GLY48 3.8 20.0 1.0
C6 A:2D0201 4.0 32.2 0.6
C2 A:2D0201 4.0 33.4 0.6
N A:GLY48 4.1 16.7 1.0
CB A:ALA52 4.2 12.8 1.0
N A:VAL49 4.3 15.3 1.0
HB3 A:ALA52 4.3 15.4 1.0
HA A:VAL49 4.4 17.9 1.0
C8 A:2D0201 4.4 34.3 0.6
C4 A:2D0201 4.5 32.9 0.6
HA3 A:GLY48 4.6 20.7 1.0
H A:ALA52 4.6 13.4 1.0
HB1 A:ALA52 4.7 15.4 1.0
H A:VAL49 4.7 18.4 1.0
H3 A:2D0201 4.8 38.7 0.6
O A:HOH480 4.9 18.9 1.0
CA A:VAL49 4.9 14.9 1.0

Reference:

G.J.Correy, J.S.Fraser. Fragment Screen Against Sars-Cov-2 Nsp Macrodomain To Be Published.
Page generated: Thu Dec 17 10:33:54 2020

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