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Chlorine in PDB 5s33: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418, PDB code: 5s33 was solved by D.Fearon, M.Schuller, V.L.Rangel, A.Douangamath, J.G.M.Rack, K.Zhu, A.Aimon, J.Brandao-Neto, A.Dias, L.Dunnet, T.J.Gorrie-Stone, A.J.Powell, T.Krojer, R.Skyner, W.Thompson, I.Ahel, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.24 / 1.06
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.243, 88.243, 39.114, 90, 90, 90
R / Rfree (%) 17.4 / 20.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418 (pdb code 5s33). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418, PDB code: 5s33:

Chlorine binding site 1 out of 1 in 5s33

Go back to Chlorine Binding Sites List in 5s33
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z906021418 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:20.0
occ:0.50
CL A:K2G501 0.0 20.0 0.5
C5 A:K2G501 1.7 19.8 0.5
C4 A:K2G501 2.7 20.0 0.5
C6 A:K2G501 2.8 19.5 0.5
O A:HOH798 2.9 62.5 1.0
O A:K2G501 3.0 17.4 0.5
C7 A:K2G501 3.2 19.3 0.5
O A:SER80 3.4 14.7 1.0
O A:HOH638 3.4 21.4 1.0
CA A:CYS81 3.9 14.2 1.0
CB A:CYS81 3.9 13.9 1.0
N A:K2G501 4.0 20.5 0.5
N1 A:K2G501 4.0 20.1 0.5
O B:HOH359 4.1 18.8 1.0
OH A:TYR68 4.2 23.4 1.0
O A:HOH669 4.2 18.0 1.0
N2 A:K2G501 4.4 18.9 0.5
C A:SER80 4.4 14.3 1.0
C3 A:K2G501 4.4 20.2 0.5
N A:CYS81 4.6 13.7 1.0
O A:HOH801 4.8 28.1 1.0
O A:HOH730 4.9 23.2 1.0
N A:VAL82 4.9 14.4 1.0
O A:HOH831 4.9 32.1 1.0
C A:CYS81 5.0 14.4 1.0

Reference:

D.Fearon, M.Schuller, V.L.Rangel, A.Douangamath, J.G.M.Rack, K.Zhu, A.Aimon, J.Brandao-Neto, A.Dias, L.Dunnet, T.J.Gorrie-Stone, A.J.Powell, T.Krojer, R.Skyner, W.Thompson, I.Ahel, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Fri Jul 26 16:38:23 2024

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