Atomistry » Chlorine » PDB 5s2y-5sda » 5sb0
Atomistry »
  Chlorine »
    PDB 5s2y-5sda »
      5sb0 »

Chlorine in PDB 5sb0: DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%

Enzymatic activity of DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%

All present enzymatic activity of DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%:
2.7.10.1;

Protein crystallography data

The structure of DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%, PDB code: 5sb0 was solved by M.Stihle, H.Richter, J.Benz, R.Hochstrasser, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.23 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.056, 76.661, 77.783, 90, 90, 90
R / Rfree (%) 20.8 / 25.6

Other elements in 5sb0:

The structure of DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6% also contains other interesting chemical elements:

Iodine (I) 1 atom
Fluorine (F) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6% (pdb code 5sb0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%, PDB code: 5sb0:

Chlorine binding site 1 out of 1 in 5sb0

Go back to Chlorine Binding Sites List in 5sb0
Chlorine binding site 1 out of 1 in the DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6%


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of DDR1, N-[[2-(2-Pyridin-3-Yloxyethyl)Cyclohexyl]Methyl]-3- (Trifluoromethoxy)Benzamide, 1.970A, P212121, Rfree=25.6% within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:52.3
occ:1.00
 NZ A:LYS655 3.6 47.0 1.0
CE A:LYS655 3.8 47.7 1.0
CD A:LYS655 3.8 46.9 1.0
CG2 A:VAL624 3.9 43.8 1.0
CA A:GLY619 4.1 54.4 1.0
O A:HOH1190 4.2 53.6 1.0
O A:PHE779 4.3 46.2 1.0
N A:GLY619 4.4 60.0 1.0
O A:HOH1105 4.4 36.6 1.0
C2 A:1IZ1002 4.7 37.6 1.0
C26 A:1IZ1002 4.9 42.0 1.0
C A:GLU618 4.9 61.8 1.0
CG A:LYS655 5.0 46.9 1.0
C A:PHE779 5.0 43.2 1.0

Reference:

H.Richter, M.Prunotto, B.Kuhn, M.G.Rudolph. Crystal Structure of A DDR1 Complex To Be Published.
Page generated: Fri Jul 26 16:39:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy