Chlorine in PDB 5sdg: Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524, PDB code: 5sdg was solved by C.T.Tham, J.A.Coker, T.Krojer, W.R.Foster, L.Koekemoer, A.Douangamath, R.Talon, D.Fearon, F.Von Delft, W.W.Yue, C.Bountra, G.A.Bezerra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	91.32 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	101.428, 116.397, 147.262, 90, 90, 90
R / Rfree (%)	22.4 / 24.7

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524 (pdb code 5sdg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524, PDB code: 5sdg:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl803 b:79.2 occ:1.00 CG A:ARG372 3.2 50.9 1.0 CB A:ARG372 3.3 46.4 1.0 CD A:ARG372 3.3 56.6 1.0 CB A:THR370 3.4 54.4 1.0 N A:ARG372 3.4 45.6 1.0 CA A:THR370 3.7 52.8 1.0 CD A:PRO371 3.7 47.9 1.0 CG2 A:THR370 3.8 55.5 1.0 N A:PRO371 3.8 49.2 1.0 C A:THR370 3.9 51.2 1.0 CA A:ARG372 3.9 45.0 1.0 NE A:ARG372 4.2 64.2 1.0 C A:PRO371 4.5 46.8 1.0 OG1 A:THR370 4.6 55.2 1.0 CG A:PRO371 4.6 49.0 1.0 O A:THR370 4.6 51.6 1.0 CA A:PRO371 4.7 48.1 1.0

Chlorine binding site 2 out of 3 in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl804 b:46.1 occ:1.00 N A:ASP687 3.3 32.5 1.0 O A:HOH953 3.3 50.6 1.0 C A:LEU685 3.6 33.8 1.0 N A:ALA686 3.6 33.7 1.0 CA A:LEU685 3.7 33.7 1.0 CB A:ASP687 3.7 34.1 1.0 CB A:LEU685 3.8 34.5 1.0 CD2 A:TYR688 3.8 31.4 1.0 CA A:ASP687 4.0 32.3 1.0 OD2 A:ASP687 4.1 43.2 1.0 NE A:ARG348 4.1 38.3 1.0 CG A:ASP687 4.2 40.3 1.0 CD A:ARG348 4.2 37.0 1.0 O A:LEU685 4.2 33.7 1.0 CD2 A:LEU685 4.3 37.2 1.0 C A:ALA686 4.3 33.2 1.0 CE2 A:TYR688 4.3 31.6 1.0 CA A:ALA686 4.4 33.5 1.0 N A:TYR688 4.4 31.1 1.0 C A:ASP687 4.5 32.0 1.0 CG A:LEU685 4.7 37.2 1.0 CB A:ALA686 4.9 32.9 1.0 CG A:TYR688 5.0 30.7 1.0

Chlorine binding site 3 out of 3 in the Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Pandda Analysis Group Deposition -- Crystal Structure of Porphyromonas Gingivalis in Complex with Z136583524 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl803 b:67.0 occ:1.00 N B:LYS254 3.8 38.8 1.0 CE2 B:PHE124 4.0 31.5 1.0 CA B:PRO253 4.0 38.9 1.0 CG B:LYS254 4.0 43.6 1.0 CZ B:PHE124 4.1 31.9 1.0 CB B:PRO253 4.2 39.3 1.0 CD2 B:PHE124 4.2 30.4 1.0 C B:PRO253 4.4 38.7 1.0 O B:ASP60 4.5 30.6 1.0 CD2 B:LEU251 4.5 41.9 1.0 CE1 B:PHE124 4.5 32.5 1.0 CG B:PHE124 4.7 30.1 1.0 CD B:LYS254 4.7 47.4 1.0 CB B:LYS254 4.7 40.9 1.0 CE B:LYS254 4.8 50.9 1.0 CD1 B:PHE124 4.8 31.5 1.0 CA B:LYS254 4.8 39.3 1.0

C.T.Tham, J.A.Coker, T.Krojer, W.R.Foster, L.Koekemoer, A.Douangamath, R.Talon, D.Fearon, F.Von Delft, W.W.Yue, C.Bountra, G.A.Bezerra. Pandda Analysis Group Deposition To Be Published.