Atomistry » Chlorine » PDB 5sio-5spk » 5sko
Atomistry »
  Chlorine »
    PDB 5sio-5spk »
      5sko »

Chlorine in PDB 5sko: Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide, PDB code: 5sko was solved by C.Joseph, J.Benz, A.Flohr, K.Groebke-Zbinden, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 2.10
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 142.289, 142.289, 142.289, 90, 90, 90
R / Rfree (%) 19.4 / 23.1

Other elements in 5sko:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide (pdb code 5sko). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide, PDB code: 5sko:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5sko

Go back to Chlorine Binding Sites List in 5sko
Chlorine binding site 1 out of 3 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:56.8
occ:1.00
 OD1 A:ASN484 3.2 67.9 1.0
CA A:PHE482 3.9 36.4 1.0
O A:HOH1024 3.9 49.0 1.0
N A:GLU483 4.0 34.9 1.0
CG A:ASN484 4.0 52.2 1.0
N A:ASN484 4.0 39.6 1.0
CB A:ASN484 4.1 43.8 1.0
CB A:PHE482 4.1 36.9 1.0
C A:PHE482 4.1 36.3 1.0
CD2 A:PHE482 4.2 38.3 1.0
CG A:PHE482 4.7 36.1 1.0
CA A:ASN484 4.7 42.9 1.0
CA A:GLU483 4.9 40.6 1.0
O A:PHE482 4.9 36.8 1.0
C A:GLU483 5.0 40.6 1.0

Chlorine binding site 2 out of 3 in 5sko

Go back to Chlorine Binding Sites List in 5sko
Chlorine binding site 2 out of 3 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl804

b:59.6
occ:1.00
 NZ A:LYS507 2.8 62.6 1.0
N A:GLY607 3.6 42.1 1.0
O A:HOH958 3.8 47.5 1.0
CA A:GLY607 3.9 41.6 1.0
CB A:ASN609 4.0 40.3 1.0
N A:ASN609 4.1 43.8 1.0
CE A:LYS507 4.2 56.3 1.0
C A:GLY607 4.4 42.7 1.0
N A:HIS608 4.4 41.8 1.0
CA A:ASN609 4.6 41.6 1.0
C A:GLU606 4.8 47.1 1.0
O A:LEU605 4.9 40.9 1.0
O A:ASN609 5.0 40.6 1.0

Chlorine binding site 3 out of 3 in 5sko

Go back to Chlorine Binding Sites List in 5sko
Chlorine binding site 3 out of 3 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Phosphodiesterase 10 in Complex with N-(3- Imidazo[1,2-A]Pyridin-2-Ylphenyl)-1-Methyl-3-(Pyrimidin-5-Ylamino) Pyrazole-4-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl805

b:65.5
occ:1.00
 N A:ARG521 3.5 41.4 1.0
CG A:ARG521 3.7 64.8 1.0
CA A:ARG520 4.0 37.1 1.0
CB A:ARG520 4.0 39.8 1.0
CB A:ARG521 4.2 54.7 1.0
C A:ARG520 4.3 37.6 1.0
CG A:ARG520 4.3 43.5 1.0
CA A:ARG521 4.4 46.6 1.0
CD A:ARG521 4.6 74.7 1.0
CD A:ARG520 4.9 46.6 1.0

Reference:

A.Flohr, D.Schlatter, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human Phosphodiesterase 10 Complex To Be Published.
Page generated: Fri Jul 26 17:01:57 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy