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Chlorine in PDB 5sml: Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045)

Enzymatic activity of Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045)

All present enzymatic activity of Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045):
3.4.22.69;

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045), PDB code: 5sml was solved by D.Fearon, C.D.Owen, P.Lukacik, C.M.Strain-Damerell, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.66 / 1.53
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.195, 52.829, 44.461, 90, 103, 90
R / Rfree (%) 19.2 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045) (pdb code 5sml). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045), PDB code: 5sml:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5sml

Go back to Chlorine Binding Sites List in 5sml
Chlorine binding site 1 out of 2 in the Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:19.8
occ:0.38
CL A:O3R404 0.0 19.8 0.4
C5 A:O3R404 1.7 19.9 0.4
C4 A:O3R404 2.7 19.4 0.4
C6 A:O3R404 2.7 20.5 0.4
CL1 A:O3R404 3.1 22.2 0.4
C3 A:O3R404 4.0 19.4 0.4
C7 A:O3R404 4.0 19.9 0.4
C2 A:O3R404 4.5 19.4 0.4

Chlorine binding site 2 out of 2 in 5sml

Go back to Chlorine Binding Sites List in 5sml
Chlorine binding site 2 out of 2 in the Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Z68337194 (Mpro-IBM0045) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:22.2
occ:0.38
CL1 A:O3R404 0.0 22.2 0.4
C6 A:O3R404 1.7 20.5 0.4
C7 A:O3R404 2.7 19.9 0.4
C5 A:O3R404 2.7 19.9 0.4
CL A:O3R404 3.1 19.8 0.4
C2 A:O3R404 4.0 19.4 0.4
C4 A:O3R404 4.0 19.4 0.4
C3 A:O3R404 4.5 19.4 0.4
O A:HOH562 4.7 32.3 0.4
ND2 A:ASN142 4.9 24.2 0.4

Reference:

D.Fearon, C.D.Owen, P.Lukacik, C.M.Strain-Damerell, F.Von Delft. Pandda Analysis Group Deposition of Sars-Cov-2 Main Protease Ligands Identified From Single Sequence-Guideddeep Generative Framework To Be Published.
Page generated: Fri Jul 26 17:02:00 2024

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