Atomistry » Chlorine » PDB 5syv-5t6h » 5szd
Atomistry »
  Chlorine »
    PDB 5syv-5t6h »
      5szd »

Chlorine in PDB 5szd: Crystal Structure of Aquifex Aeolicus Hfq at 1.5A

Protein crystallography data

The structure of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A, PDB code: 5szd was solved by K.Stanek, J.Patterson, P.S.Randolph, C.Mura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.35 / 1.49
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 63.460, 66.060, 66.100, 60.05, 83.94, 77.17
R / Rfree (%) 13.2 / 17

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A (pdb code 5szd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A, PDB code: 5szd:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 1 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl102

b:35.2
occ:1.00
O F:HOH201 2.8 35.0 1.0
N F:TYR6 3.0 13.4 1.0
C F:MET4 3.2 19.8 0.5
C F:MET4 3.2 20.9 0.5
CA F:MET4 3.3 22.1 0.5
CA F:MET4 3.3 24.0 0.5
N F:PRO5 3.4 18.7 1.0
CB F:MET4 3.5 24.3 0.5
CB F:MET4 3.6 27.5 0.5
CA F:TYR6 3.7 14.8 1.0
O F:MET4 3.7 19.2 0.5
CD F:PRO5 3.7 19.2 1.0
O F:MET4 3.7 20.4 0.5
N F:LYS7 3.7 16.0 1.0
CB F:TYR6 3.7 17.4 1.0
C F:TYR6 3.8 15.6 1.0
CD2 F:TYR6 3.8 21.8 1.0
C F:PRO5 4.1 15.3 1.0
CG F:TYR6 4.2 20.0 1.0
CA F:PRO5 4.3 17.4 1.0
CG F:PRO5 4.4 20.7 1.0
CG F:MET4 4.4 25.6 0.5
CA F:LYS7 4.4 18.6 1.0
CG F:MET4 4.5 30.3 0.5
O F:TYR6 4.7 18.1 1.0
OE1 F:GLU10 4.7 22.7 1.0
N F:MET4 4.7 23.9 0.5
N F:MET4 4.7 24.8 0.5
CB F:LYS7 4.8 23.0 1.0
CE2 F:TYR6 4.9 24.3 1.0

Chlorine binding site 2 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 2 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl103

b:17.4
occ:1.00
O G:HOH215 2.9 25.6 1.0
O D:HOH217 3.0 17.7 1.0
O D:HOH207 3.1 15.9 1.0
N G:TYR6 3.1 11.7 1.0
CB G:MET4 3.6 24.5 1.0
CB G:TYR6 3.6 12.9 1.0
CA G:TYR6 3.6 13.9 1.0
N G:LYS7 3.7 14.0 0.6
N G:LYS7 3.7 13.6 0.4
CE2 D:TYR26 3.8 13.6 1.0
C G:TYR6 3.8 14.0 1.0
N G:PRO5 3.8 15.4 1.0
CD G:PRO5 3.9 14.4 1.0
CD2 G:TYR6 4.0 14.6 1.0
C G:MET4 4.1 19.7 1.0
CG G:PRO5 4.2 16.5 1.0
C G:PRO5 4.2 11.0 1.0
CG G:TYR6 4.3 12.0 1.0
CA G:MET4 4.4 26.5 1.0
CA G:LYS7 4.4 14.6 0.4
CD2 D:TYR26 4.4 11.7 1.0
CA G:LYS7 4.5 16.2 0.6
O G:TYR6 4.5 15.8 1.0
O G:HOH212 4.5 23.1 1.0
CA G:PRO5 4.5 13.3 1.0
O G:MET4 4.5 19.4 1.0
CG G:MET4 4.6 24.7 1.0
CZ D:TYR26 4.7 12.5 1.0
OH D:TYR26 4.7 14.2 1.0
O D:HOH224 4.8 21.7 1.0
CD D:ARG32 4.8 15.8 1.0
CB G:LYS7 4.8 15.7 0.4
OE1 G:GLU10 4.9 25.1 1.0
CB D:ARG32 4.9 15.2 1.0
O D:GLY30 4.9 15.0 1.0
CB G:LYS7 5.0 19.0 0.6

Chlorine binding site 3 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 3 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl104

b:16.6
occ:1.00
O H:HOH202 3.0 25.4 1.0
O E:HOH210 3.0 16.4 1.0
O E:HOH214 3.0 17.6 1.0
N H:TYR6 3.1 11.6 1.0
CB H:TYR6 3.6 11.3 1.0
CB H:MET4 3.6 15.7 0.6
CB H:MET4 3.6 24.5 0.4
CA H:TYR6 3.6 11.1 1.0
N H:LYS7 3.7 13.0 0.5
N H:LYS7 3.8 13.2 0.5
CE2 E:TYR26 3.8 11.7 1.0
C H:TYR6 3.8 13.2 1.0
N H:PRO5 3.8 14.3 1.0
CD H:PRO5 3.9 14.8 1.0
CD2 H:TYR6 3.9 13.2 1.0
C H:MET4 4.1 14.0 0.6
C H:MET4 4.1 20.1 0.4
CG H:PRO5 4.2 15.8 1.0
CG H:TYR6 4.2 10.7 1.0
C H:PRO5 4.2 12.3 1.0
CA H:MET4 4.4 13.7 0.6
CA H:MET4 4.4 26.1 0.4
CA H:LYS7 4.5 14.5 0.5
CA H:LYS7 4.5 13.6 0.5
CD2 E:TYR26 4.5 12.4 1.0
O H:HOH219 4.5 23.2 1.0
CA H:PRO5 4.5 12.2 1.0
CG H:MET4 4.5 18.5 0.6
O H:TYR6 4.5 14.8 1.0
O H:MET4 4.6 20.1 0.4
O H:MET4 4.6 13.8 0.6
CG H:MET4 4.6 24.2 0.4
O E:HOH227 4.7 21.7 1.0
OH E:TYR26 4.7 14.4 1.0
CZ E:TYR26 4.7 11.6 1.0
CB H:LYS7 4.8 18.3 0.5
OE1 H:GLU10 4.8 24.7 1.0
CD E:ARG32 4.9 14.6 1.0
O E:GLY30 4.9 13.2 1.0
CB H:PRO5 5.0 14.6 1.0
CB H:LYS7 5.0 16.9 0.5

Chlorine binding site 4 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 4 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl103

b:15.6
occ:1.00
O F:HOH214 3.0 17.9 1.0
O I:HOH209 3.0 23.9 1.0
O F:HOH208 3.0 14.2 1.0
N I:TYR6 3.1 10.9 1.0
CB I:MET4 3.5 27.2 0.3
CB I:MET4 3.6 13.8 0.7
CB I:TYR6 3.6 10.4 1.0
CA I:TYR6 3.6 10.0 1.0
N I:LYS7 3.8 11.9 1.0
C I:TYR6 3.8 11.4 1.0
CE2 F:TYR26 3.8 12.1 1.0
N I:PRO5 3.8 12.7 1.0
CD I:PRO5 3.8 14.0 1.0
CD2 I:TYR6 3.9 13.1 1.0
C I:MET4 4.0 11.6 0.7
C I:MET4 4.1 19.5 0.3
CG I:PRO5 4.2 15.0 1.0
CG I:TYR6 4.2 10.1 1.0
C I:PRO5 4.2 11.4 1.0
CA I:MET4 4.4 10.6 0.7
CA I:MET4 4.4 25.6 0.3
O I:HOH219 4.5 26.8 1.0
CG I:MET4 4.5 28.8 0.3
CA I:PRO5 4.5 12.5 1.0
CD2 F:TYR26 4.5 11.0 1.0
CG I:MET4 4.5 16.2 0.7
CA I:LYS7 4.6 14.3 1.0
O I:MET4 4.6 13.6 0.7
O I:TYR6 4.6 15.4 1.0
O I:MET4 4.6 20.5 0.3
O F:HOH223 4.7 23.5 1.0
OH F:TYR26 4.8 14.4 1.0
CZ F:TYR26 4.8 12.7 1.0
CD F:ARG32 4.9 15.4 1.0
OE1 I:GLU10 4.9 22.7 1.0
O F:GLY30 4.9 14.3 1.0
CB I:PRO5 5.0 14.1 1.0
CB F:ARG32 5.0 12.4 1.0

Chlorine binding site 5 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 5 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl103

b:17.1
occ:1.00
O A:HOH214 3.0 16.7 1.0
O A:HOH207 3.0 14.4 1.0
O J:HOH206 3.0 26.6 1.0
N J:TYR6 3.1 11.1 1.0
CB J:MET4 3.6 23.3 1.0
CB J:TYR6 3.6 11.8 1.0
CA J:TYR6 3.6 11.1 1.0
N J:LYS7 3.7 13.0 0.6
N J:LYS7 3.7 12.1 0.4
CE1 A:TYR26 3.7 10.9 1.0
C J:TYR6 3.7 11.8 1.0
N J:PRO5 3.8 13.7 1.0
CD J:PRO5 3.9 14.0 1.0
CD2 J:TYR6 3.9 12.8 1.0
C J:MET4 4.0 17.8 1.0
CG J:PRO5 4.2 15.4 1.0
C J:PRO5 4.2 10.5 1.0
CG J:TYR6 4.2 10.8 1.0
CA J:MET4 4.4 25.6 1.0
CA J:LYS7 4.4 13.5 0.4
CA J:LYS7 4.4 15.6 0.6
CD1 A:TYR26 4.5 10.8 1.0
O J:TYR6 4.5 14.3 1.0
O J:HOH210 4.5 22.5 1.0
CA J:PRO5 4.5 12.7 1.0
O J:MET4 4.5 16.5 1.0
CG J:MET4 4.6 23.5 1.0
O A:HOH223 4.7 21.9 1.0
CZ A:TYR26 4.7 11.1 1.0
OH A:TYR26 4.8 14.2 1.0
CB J:LYS7 4.8 16.0 0.4
OE1 J:GLU10 4.9 22.8 1.0
CD A:ARG32 4.9 15.4 1.0
CB A:ARG32 4.9 13.4 1.0
O A:GLY30 4.9 14.1 1.0
CB J:LYS7 4.9 20.4 0.6
CB J:PRO5 5.0 14.6 1.0

Chlorine binding site 6 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 6 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl103

b:16.8
occ:1.00
O K:HOH207 3.0 23.4 1.0
O B:HOH213 3.1 15.6 1.0
O B:HOH216 3.1 18.0 1.0
N K:TYR6 3.1 11.6 1.0
CB K:MET4 3.6 19.9 1.0
CB K:TYR6 3.6 12.3 1.0
CA K:TYR6 3.6 12.3 1.0
N K:LYS7 3.7 13.0 0.5
C K:TYR6 3.7 12.3 1.0
CE2 B:TYR26 3.7 12.5 1.0
N K:LYS7 3.8 12.5 0.5
N K:PRO5 3.8 13.2 1.0
CD K:PRO5 3.9 13.9 1.0
CD2 K:TYR6 3.9 13.1 1.0
C K:MET4 4.1 16.4 1.0
CG K:TYR6 4.2 11.3 1.0
C K:PRO5 4.3 12.8 1.0
CG K:PRO5 4.3 15.2 1.0
CA K:MET4 4.4 18.9 1.0
CD2 B:TYR26 4.4 11.4 1.0
O K:TYR6 4.4 14.0 1.0
CA K:LYS7 4.4 13.8 0.5
CA K:LYS7 4.5 15.0 0.5
O K:HOH212 4.5 25.8 1.0
CA K:PRO5 4.5 13.0 1.0
O K:MET4 4.6 17.3 1.0
CG K:MET4 4.6 23.0 1.0
O B:HOH226 4.7 21.8 1.0
OH B:TYR26 4.7 15.1 1.0
CZ B:TYR26 4.7 11.9 1.0
CB K:LYS7 4.8 15.8 0.5
CD B:ARG32 4.9 16.5 1.0
OE1 K:GLU10 4.9 21.3 1.0
O B:GLY30 4.9 14.7 1.0
CB B:ARG32 4.9 13.3 1.0
CB K:LYS7 5.0 17.7 0.5

Chlorine binding site 7 out of 7 in 5szd

Go back to Chlorine Binding Sites List in 5szd
Chlorine binding site 7 out of 7 in the Crystal Structure of Aquifex Aeolicus Hfq at 1.5A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Aquifex Aeolicus Hfq at 1.5A within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl103

b:18.4
occ:1.00
O L:HOH213 2.9 26.3 1.0
O C:HOH207 3.0 16.0 1.0
O C:HOH215 3.0 18.3 1.0
N L:TYR6 3.1 12.2 1.0
CB L:MET4 3.6 18.4 1.0
CB L:TYR6 3.6 11.8 1.0
CA L:TYR6 3.6 12.3 1.0
N L:LYS7 3.7 14.0 0.5
N L:LYS7 3.7 13.4 0.5
C L:TYR6 3.7 12.8 1.0
CE2 C:TYR26 3.8 13.2 1.0
N L:PRO5 3.8 13.5 1.0
CD L:PRO5 3.9 13.7 1.0
CD2 L:TYR6 3.9 13.4 1.0
C L:MET4 4.0 16.3 1.0
C L:PRO5 4.2 12.0 1.0
CG L:PRO5 4.2 15.2 1.0
CG L:TYR6 4.2 11.5 1.0
CA L:MET4 4.4 18.1 1.0
CA L:LYS7 4.4 15.5 0.5
CD2 C:TYR26 4.4 11.1 1.0
CA L:LYS7 4.4 16.8 0.5
O L:TYR6 4.5 15.6 1.0
CA L:PRO5 4.5 13.7 1.0
O L:HOH214 4.5 24.6 1.0
O L:MET4 4.5 17.0 1.0
CG L:MET4 4.6 21.1 1.0
CZ C:TYR26 4.7 12.7 1.0
O C:HOH224 4.8 21.6 1.0
OH C:TYR26 4.8 15.9 1.0
CB L:LYS7 4.8 17.0 0.5
OE1 L:GLU10 4.9 24.3 1.0
O C:GLY30 4.9 14.9 1.0
CD C:ARG32 4.9 15.0 1.0
CB C:ARG32 4.9 13.4 1.0
CB L:PRO5 5.0 14.8 1.0
CB L:LYS7 5.0 19.9 0.5

Reference:

K.A.Stanek, J.Patterson-West, P.S.Randolph, C.Mura. Crystal Structure and Rna-Binding Properties of An Hfq Homolog From the Deep-Branching Aquificae: Conservation of the Lateral Rna-Binding Mode. Acta Crystallogr D Struct V. 73 294 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28375142
DOI: 10.1107/S2059798317000031
Page generated: Fri Jul 26 17:12:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy