Chlorine in PDB 5t4m: Crystal Structure of Human Protocadherin-15 EC3-5

The structure of Crystal Structure of Human Protocadherin-15 EC3-5, PDB code: 5t4m was solved by R.E.Powers, R.Gaudet, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.36 / 2.24
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	105.608, 105.608, 193.672, 90.00, 90.00, 120.00
R / Rfree (%)	18.9 / 22.1

The structure of Crystal Structure of Human Protocadherin-15 EC3-5 also contains other interesting chemical elements:

Calcium

(Ca)

10 atoms

The binding sites of Chlorine atom in the Crystal Structure of Human Protocadherin-15 EC3-5 (pdb code 5t4m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Protocadherin-15 EC3-5, PDB code: 5t4m:

Chlorine binding site 1 out of 1 in the Crystal Structure of Human Protocadherin-15 EC3-5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Protocadherin-15 EC3-5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl706 b:94.3 occ:1.00 CA B:CA705 2.6 74.5 1.0 OD1 B:ASP411 3.3 82.1 1.0 OD1 B:ASP366 3.4 86.0 1.0 O B:HOH836 3.6 82.0 1.0 OD2 B:ASP366 3.6 86.1 1.0 O B:HOH840 3.8 73.5 1.0 O B:HOH830 3.8 70.7 1.0 CG B:ASP366 3.8 84.4 1.0 CA B:ASP411 4.0 76.9 1.0 O B:LYS410 4.0 78.5 1.0 OD1 B:ASN369 4.3 73.3 1.0 CG B:ASP411 4.4 75.0 1.0 CG B:GLN370 4.5 77.2 1.0 N B:ASP411 4.6 77.1 1.0 C B:LYS410 4.6 78.2 1.0 CB B:ASP411 4.7 75.0 1.0 O B:ASP411 4.8 80.7 1.0 C B:ASP411 4.8 78.0 1.0 O B:HOH805 4.8 98.8 1.0 O B:GLU367 5.0 72.0 1.0

R.E.Powers, R.Gaudet, M.Sotomayor. A Partial Calcium-Free Linker Confers Flexibility to Inner-Ear Protocadherin-15. Structure V. 25 482 2017.
ISSN: ISSN 1878-4186
PubMed: 28238533
DOI: 10.1016/J.STR.2017.01.014