Chlorine in PDB 5t67: X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product

The structure of X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product, PDB code: 5t67 was solved by H.M.Holden, J.B.Thoden, G.T.Dow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.088, 108.893, 142.783, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 24.9

The structure of X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product (pdb code 5t67). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product, PDB code: 5t67:

Chlorine binding site 1 out of 1 in the X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the KIJD1 C3-Methyltransferase From Actinomadura Kijaniata in Complex with Sah and Dtdp-Sugar Product within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl509 b:40.5 occ:1.00 N A:ASP25 3.3 13.7 1.0 CE1 A:HIS300 3.7 17.6 1.0 CA A:LEU24 3.8 15.2 1.0 CD1 A:LEU24 4.0 16.1 1.0 C A:LEU24 4.0 15.4 1.0 CB A:ASP25 4.0 16.4 1.0 CA A:ASP25 4.2 15.4 1.0 O A:PHE23 4.2 15.0 1.0 NE2 A:HIS300 4.3 21.0 1.0 O A:ASP25 4.3 14.1 1.0 N A:LEU24 4.6 15.1 1.0 C A:ASP25 4.7 13.5 1.0 ND1 A:HIS300 4.7 23.1 1.0 C A:PHE23 4.7 16.4 1.0 CB A:LEU24 4.7 15.8 1.0 CG A:LEU24 4.8 15.8 1.0 CB A:ALA296 4.9 15.2 1.0

G.T.Dow, J.B.Thoden, H.M.Holden. Structural Studies on KIJD1, A Sugar C-3'-Methyltransferase. Protein Sci. V. 25 2282 2016.
ISSN: ESSN 1469-896X
PubMed: 27595766
DOI: 10.1002/PRO.3034