Atomistry » Chlorine » PDB 5syv-5t6h » 5t6c
Atomistry »
  Chlorine »
    PDB 5syv-5t6h »
      5t6c »

Chlorine in PDB 5t6c: Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand

Enzymatic activity of Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand

All present enzymatic activity of Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand:
2.3.1.97;

Protein crystallography data

The structure of Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand, PDB code: 5t6c was solved by D.A.Robinson, P.G.Wyatt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.143, 58.599, 152.146, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 25.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand (pdb code 5t6c). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand, PDB code: 5t6c:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5t6c

Go back to Chlorine Binding Sites List in 5t6c
Chlorine binding site 1 out of 2 in the Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:21.4
occ:1.00
CL2 A:75S502 0.0 21.4 1.0
CAV A:75S502 1.8 17.4 1.0
CAJ A:75S502 2.7 15.5 1.0
CBB A:75S502 2.7 16.2 1.0
OAT A:75S502 3.1 17.3 1.0
CAP A:75S502 3.3 15.0 1.0
CA A:GLY455 3.5 13.6 1.0
O A:HOH750 3.6 32.5 1.0
N A:GLY455 3.6 13.8 1.0
O A:HOH770 3.7 15.2 1.0
O A:HOH1074 3.8 22.5 1.0
CAG A:75S502 4.0 13.6 1.0
CAU A:75S502 4.0 18.1 1.0
CAY A:75S502 4.0 15.5 1.0
O A:HOH768 4.1 17.5 1.0
CAZ A:75S502 4.2 14.7 1.0
C A:ASP454 4.2 14.5 1.0
CB A:ASP150 4.2 14.2 1.0
CB A:ASP454 4.3 15.7 1.0
O A:HOH622 4.4 27.8 1.0
CA A:ASP150 4.4 14.5 1.0
CAI A:75S502 4.6 15.1 1.0
O A:HOH931 4.6 10.3 1.0
O A:ASP454 4.6 15.7 1.0
CA A:ASP454 4.8 14.6 1.0
C A:GLY455 5.0 13.9 1.0

Chlorine binding site 2 out of 2 in 5t6c

Go back to Chlorine Binding Sites List in 5t6c
Chlorine binding site 2 out of 2 in the Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Aspergillus Fumigatus N-Myristoyl Transferase in Complex with Myristoyl Coa and A Dichloro-Methylpyridinyl-Methoxy- Phenyl-Pyridine Piperazine Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:18.9
occ:1.00
CL1 A:75S502 0.0 18.9 1.0
CAU A:75S502 1.7 18.1 1.0
CBB A:75S502 2.7 16.2 1.0
CAI A:75S502 2.7 15.1 1.0
OAT A:75S502 3.0 17.3 1.0
OH A:TYR393 3.6 13.3 1.0
CZ A:PHE157 3.9 21.6 1.0
CAP A:75S502 3.9 15.0 1.0
CAV A:75S502 3.9 17.4 1.0
CAZ A:75S502 4.0 14.7 1.0
CE1 A:HIS265 4.0 14.0 1.0
CAY A:75S502 4.0 15.5 1.0
CD1 A:TYR263 4.0 11.9 1.0
CE1 A:TYR263 4.1 12.1 1.0
CAW A:75S502 4.1 15.3 1.0
CG A:TYR263 4.3 11.2 1.0
CAA A:75S502 4.3 18.4 1.0
ND2 A:ASN434 4.3 15.2 1.0
CE1 A:PHE157 4.4 19.7 1.0
CZ A:TYR263 4.4 11.8 1.0
CAJ A:75S502 4.5 15.5 1.0
O A:HOH768 4.5 17.5 1.0
CAG A:75S502 4.5 13.6 1.0
CZ A:TYR393 4.5 11.2 1.0
CD2 A:TYR263 4.5 11.8 1.0
CE2 A:TYR393 4.6 11.7 1.0
CE2 A:TYR263 4.6 11.6 1.0
O A:HOH940 4.7 20.0 1.0
NAQ A:75S502 4.7 13.0 1.0
NE2 A:HIS265 4.8 15.2 1.0
CE2 A:PHE157 4.9 20.3 1.0
CB A:TYR263 4.9 12.3 1.0
ND1 A:HIS265 4.9 12.0 1.0

Reference:

T.Bayliss, D.A.Robinson, V.C.Smith, S.Brand, S.P.Mcelroy, L.S.Torrie, C.Mpamhanga, S.Norval, L.Stojanovski, R.Brenk, J.A.Frearson, K.D.Read, I.H.Gilbert, P.G.Wyatt. Design and Synthesis of Brain Penetrant Trypanocidal N-Myristoyltransferase Inhibitors. J. Med. Chem. V. 60 9790 2017.
ISSN: ISSN 1520-4804
PubMed: 29125744
DOI: 10.1021/ACS.JMEDCHEM.7B01255
Page generated: Fri Jul 26 17:19:12 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy