Chlorine in PDB 5td3: Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

Enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis

All present enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis:
1.13.11.1;

Protein crystallography data

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.51 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.410, 55.860, 85.690, 90.00, 116.30, 90.00
R / Rfree (%) 17.7 / 21

Other elements in 5td3:

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis (pdb code 5td3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis, PDB code: 5td3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5td3

Go back to Chlorine Binding Sites List in 5td3
Chlorine binding site 1 out of 2 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:27.9
occ:0.86
NE A:ARG128 3.2 29.9 1.0
O A:HOH822 3.5 45.1 1.0
CD A:ARG128 3.8 36.7 1.0
CG A:ARG128 4.2 33.3 1.0
CZ A:ARG128 4.2 35.5 1.0
NH2 A:ARG128 4.3 35.5 1.0
O A:HOH710 4.9 30.8 1.0
O A:HOH656 4.9 35.3 1.0
O A:HOH820 4.9 32.6 1.0

Chlorine binding site 2 out of 2 in 5td3

Go back to Chlorine Binding Sites List in 5td3
Chlorine binding site 2 out of 2 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:32.2
occ:1.00
O A:HOH798 3.1 32.7 1.0
N A:GLN216 3.3 23.7 1.0
N A:PRO215 3.6 23.0 1.0
CG A:GLN216 3.6 40.2 1.0
CB A:GLN216 3.6 32.5 1.0
CD A:PRO215 3.6 26.7 1.0
C A:PRO214 3.8 23.5 1.0
CB A:PRO214 3.8 19.5 1.0
CG A:PRO215 3.9 32.2 1.0
CA A:GLN216 3.9 24.2 1.0
CA A:PRO214 4.0 18.8 1.0
C A:PRO215 4.3 24.5 1.0
CA A:PRO215 4.4 21.5 1.0
O A:PRO214 4.4 23.5 1.0
N A:GLY217 4.5 17.4 1.0
C A:GLN216 4.5 24.2 1.0
CB A:PRO215 4.7 26.1 1.0
CD A:GLN216 4.9 46.0 1.0

Reference:

D.G.Conrady, D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Vietnamiensis To Be Published.
Page generated: Sat Dec 12 12:28:07 2020

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