Chlorine in PDB 5tsf: Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
Protein crystallography data
The structure of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121, PDB code: 5tsf
was solved by
G.A.Camacho-Hernandez,
K.Kaczanowska,
M.Harel,
M.G.Finn,
P.W.Taylor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
86.72 /
2.29
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
88.190,
115.700,
131.000,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19 /
24.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
(pdb code 5tsf). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121, PDB code: 5tsf:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 5tsf
Go back to
Chlorine Binding Sites List in 5tsf
Chlorine binding site 1 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:47.2
occ:1.00
|
CL6
|
A:7KO301
|
0.0
|
47.2
|
1.0
|
C6
|
A:7KO301
|
1.7
|
34.5
|
1.0
|
N1
|
A:7KO301
|
2.6
|
36.1
|
1.0
|
C5
|
A:7KO301
|
2.7
|
28.0
|
1.0
|
OG1
|
E:THR36
|
3.3
|
26.6
|
1.0
|
O
|
E:HOH427
|
3.6
|
40.0
|
1.0
|
CD1
|
E:TYR55
|
3.7
|
26.7
|
1.0
|
C2
|
A:7KO301
|
3.8
|
35.1
|
1.0
|
C4
|
A:7KO301
|
3.9
|
25.7
|
1.0
|
CB
|
E:THR36
|
4.0
|
24.0
|
1.0
|
CB
|
E:TYR55
|
4.1
|
24.1
|
1.0
|
CG
|
E:TYR55
|
4.4
|
24.9
|
1.0
|
CG2
|
E:THR36
|
4.4
|
23.6
|
1.0
|
N3
|
A:7KO301
|
4.4
|
34.4
|
1.0
|
CG2
|
E:ILE118
|
4.5
|
28.4
|
1.0
|
CE1
|
E:TYR55
|
4.7
|
32.3
|
1.0
|
CD1
|
E:ILE118
|
4.9
|
24.6
|
1.0
|
NAA
|
A:7KO301
|
4.9
|
40.4
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 5tsf
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Chlorine Binding Sites List in 5tsf
Chlorine binding site 2 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:46.9
occ:1.00
|
CL6
|
A:7KO302
|
0.0
|
46.9
|
1.0
|
C6
|
A:7KO302
|
1.8
|
45.1
|
1.0
|
N1
|
A:7KO302
|
2.6
|
45.5
|
1.0
|
C5
|
A:7KO302
|
2.7
|
36.4
|
1.0
|
OG1
|
A:THR36
|
3.4
|
31.4
|
1.0
|
CD1
|
A:TYR55
|
3.8
|
26.9
|
1.0
|
O
|
A:HOH430
|
3.8
|
46.3
|
1.0
|
C2
|
A:7KO302
|
3.9
|
44.2
|
1.0
|
C4
|
A:7KO302
|
4.0
|
32.9
|
1.0
|
CB
|
A:THR36
|
4.1
|
26.5
|
1.0
|
CB
|
A:TYR55
|
4.2
|
26.5
|
1.0
|
NE2
|
A:GLN57
|
4.4
|
46.9
|
1.0
|
CG2
|
A:ILE118
|
4.5
|
27.9
|
1.0
|
CG2
|
A:THR36
|
4.5
|
27.0
|
1.0
|
N3
|
A:7KO302
|
4.5
|
35.8
|
1.0
|
CG
|
A:TYR55
|
4.5
|
33.9
|
1.0
|
CE1
|
A:TYR55
|
4.7
|
33.6
|
1.0
|
CD1
|
A:ILE118
|
4.8
|
33.1
|
1.0
|
NAA
|
A:7KO302
|
5.0
|
37.1
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 5tsf
Go back to
Chlorine Binding Sites List in 5tsf
Chlorine binding site 3 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:44.5
occ:1.00
|
CL6
|
C:7KO301
|
0.0
|
44.5
|
1.0
|
C6
|
C:7KO301
|
1.8
|
32.3
|
1.0
|
N1
|
C:7KO301
|
2.6
|
32.9
|
1.0
|
C5
|
C:7KO301
|
2.7
|
24.6
|
1.0
|
OG1
|
B:THR36
|
3.5
|
26.8
|
1.0
|
CD1
|
B:TYR55
|
3.7
|
28.6
|
1.0
|
O
|
C:HOH472
|
3.8
|
36.1
|
1.0
|
C2
|
C:7KO301
|
3.9
|
28.1
|
1.0
|
C4
|
C:7KO301
|
4.0
|
31.1
|
1.0
|
CB
|
B:THR36
|
4.1
|
26.4
|
1.0
|
CB
|
B:TYR55
|
4.1
|
27.5
|
1.0
|
CG
|
B:TYR55
|
4.4
|
29.4
|
1.0
|
CG2
|
B:THR36
|
4.4
|
27.8
|
1.0
|
CG2
|
B:ILE118
|
4.5
|
25.9
|
1.0
|
N3
|
C:7KO301
|
4.5
|
29.9
|
1.0
|
CE1
|
B:TYR55
|
4.6
|
28.6
|
1.0
|
NAA
|
C:7KO301
|
5.0
|
25.9
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 5tsf
Go back to
Chlorine Binding Sites List in 5tsf
Chlorine binding site 4 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:62.7
occ:1.00
|
CL6
|
D:7KO301
|
0.0
|
62.7
|
1.0
|
C6
|
D:7KO301
|
1.7
|
41.8
|
1.0
|
N1
|
D:7KO301
|
2.6
|
45.8
|
1.0
|
C5
|
D:7KO301
|
2.6
|
37.5
|
1.0
|
OG1
|
C:THR36
|
3.6
|
30.2
|
1.0
|
C2
|
D:7KO301
|
3.8
|
49.5
|
1.0
|
CD1
|
C:TYR55
|
3.8
|
34.7
|
1.0
|
C4
|
D:7KO301
|
3.8
|
33.6
|
1.0
|
O
|
C:HOH433
|
3.9
|
33.3
|
1.0
|
CB
|
C:TYR55
|
4.3
|
28.9
|
1.0
|
CB
|
C:THR36
|
4.3
|
29.6
|
1.0
|
N3
|
D:7KO301
|
4.3
|
42.6
|
1.0
|
CG
|
C:TYR55
|
4.5
|
32.7
|
1.0
|
CG2
|
C:ILE118
|
4.6
|
23.5
|
1.0
|
CG2
|
C:THR36
|
4.7
|
24.2
|
1.0
|
CE1
|
C:TYR55
|
4.7
|
34.5
|
1.0
|
CD1
|
C:ILE118
|
4.8
|
29.0
|
1.0
|
NAA
|
D:7KO301
|
4.9
|
36.1
|
1.0
|
NAH
|
D:7KO301
|
4.9
|
35.8
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 5tsf
Go back to
Chlorine Binding Sites List in 5tsf
Chlorine binding site 5 out
of 5 in the Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Achbp From Aplysia Californica Complex with 2- Aminopyrimidine at pH 7.0 Spacegroup P212121 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl301
b:40.3
occ:1.00
|
CL6
|
E:7KO301
|
0.0
|
40.3
|
1.0
|
C6
|
E:7KO301
|
1.7
|
35.2
|
1.0
|
N1
|
E:7KO301
|
2.6
|
40.7
|
1.0
|
C5
|
E:7KO301
|
2.7
|
30.9
|
1.0
|
OG1
|
D:THR36
|
3.4
|
19.7
|
1.0
|
CD1
|
D:TYR55
|
3.6
|
23.9
|
1.0
|
C2
|
E:7KO301
|
3.8
|
32.7
|
1.0
|
C4
|
E:7KO301
|
4.0
|
28.3
|
1.0
|
CB
|
D:THR36
|
4.0
|
21.8
|
1.0
|
CB
|
D:TYR55
|
4.1
|
25.0
|
1.0
|
CG
|
D:TYR55
|
4.3
|
25.2
|
1.0
|
CG2
|
D:THR36
|
4.4
|
19.8
|
1.0
|
CG2
|
D:ILE118
|
4.4
|
22.6
|
1.0
|
N3
|
E:7KO301
|
4.5
|
34.5
|
1.0
|
CE1
|
D:TYR55
|
4.6
|
29.8
|
1.0
|
CD1
|
D:ILE118
|
4.8
|
26.2
|
1.0
|
NE2
|
D:GLN57
|
4.8
|
36.9
|
1.0
|
NAA
|
E:7KO301
|
4.9
|
29.7
|
1.0
|
|
Reference:
G.A.Camacho-Hernandez,
K.Kaczanowska,
M.Harel,
M.G.Finn,
P.W.Taylor.
Crystal Structure of Achbp From Aplysia Californica Complex with 2-Aminopyrimidine at pH 7.0 Spacegroup P212121 To Be Published.
Page generated: Fri Jul 26 17:41:30 2024
|