Chlorine in PDB 5ub3: XAC2383 From Xanthomonas Citri Bound to Chloride Ion

The structure of XAC2383 From Xanthomonas Citri Bound to Chloride Ion, PDB code: 5ub3 was solved by R.D.Teixeira, C.R.Guzzo, C.S.Farah, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.87 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.544, 66.860, 113.033, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 22.6

The binding sites of Chlorine atom in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion (pdb code 5ub3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion, PDB code: 5ub3:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of XAC2383 From Xanthomonas Citri Bound to Chloride Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:20.4 occ:1.00 OG A:SER154 3.0 17.5 1.0 O A:HOH501 3.2 31.8 1.0 N A:SER154 3.2 17.8 1.0 N A:THR153 3.6 17.1 1.0 CB A:SER154 3.7 17.6 1.0 CB A:THR153 3.7 16.7 1.0 CE2 A:PHE122 3.8 18.3 1.0 CG2 A:THR95 3.8 19.5 1.0 CA A:THR153 4.0 17.2 1.0 CZ A:PHE122 4.0 17.5 1.0 CA A:SER154 4.1 16.8 1.0 OG A:SER152 4.1 20.4 1.0 C A:THR153 4.1 16.6 1.0 OG1 A:THR95 4.1 18.6 1.0 CB A:THR95 4.2 19.0 1.0 OG1 A:THR153 4.4 16.5 1.0 C A:SER152 4.5 16.7 1.0 N A:GLY155 4.7 17.6 1.0 CA A:SER152 4.8 17.8 1.0 CG2 A:THR153 4.8 16.5 1.0 NZ A:LYS193 4.8 29.0 1.0 C A:SER154 4.9 18.8 1.0 CB A:SER152 5.0 18.6 1.0

Chlorine binding site 2 out of 4 in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of XAC2383 From Xanthomonas Citri Bound to Chloride Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:26.9 occ:1.00 O A:HOH561 3.0 24.1 1.0 NH1 A:ARG293 3.2 23.2 1.0 O A:HOH608 3.2 31.7 1.0 NH2 A:ARG284 3.4 29.3 1.0 CD A:ARG293 3.6 25.3 1.0 CA A:SER290 3.6 19.6 1.0 CB A:SER290 3.7 20.0 1.0 N A:SER290 4.0 19.7 1.0 CG2 A:THR289 4.1 20.1 1.0 CZ A:ARG293 4.2 24.1 1.0 CG A:PRO239 4.3 20.8 1.0 NE A:ARG293 4.3 21.4 1.0 C A:THR289 4.5 21.9 1.0 CB A:PRO239 4.5 18.7 1.0 CG A:ARG293 4.6 23.2 1.0 CZ A:ARG284 4.7 32.5 1.0 O A:THR289 4.7 21.1 1.0 CB A:ARG293 4.8 22.8 1.0 OD1 A:ASP121 4.8 23.1 1.0 O A:HOH551 4.9 26.0 1.0 CB A:THR289 4.9 21.9 1.0 OG A:SER290 4.9 19.4 1.0 C A:SER290 5.0 19.9 1.0

Chlorine binding site 3 out of 4 in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of XAC2383 From Xanthomonas Citri Bound to Chloride Ion within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:20.3 occ:1.00 OG B:SER154 3.0 16.4 1.0 N B:SER154 3.2 18.7 1.0 O B:HOH507 3.5 33.7 1.0 N B:THR153 3.6 18.7 1.0 CB B:SER154 3.7 19.2 1.0 CE2 B:PHE122 3.7 19.0 1.0 CB B:THR153 3.8 17.6 1.0 CZ B:PHE122 3.8 20.0 1.0 CG2 B:THR95 3.9 20.1 1.0 OG B:SER152 4.0 22.9 1.0 CA B:THR153 4.0 16.3 1.0 CA B:SER154 4.0 18.4 1.0 OG1 B:THR95 4.1 21.1 1.0 C B:THR153 4.1 16.9 1.0 CB B:THR95 4.2 19.9 1.0 OG1 B:THR153 4.5 16.0 1.0 C B:SER152 4.6 21.0 1.0 CG2 B:THR153 4.7 17.4 1.0 N B:GLY155 4.8 16.9 1.0 CA B:SER152 4.8 21.6 1.0 C B:SER154 4.9 16.8 1.0 CD2 B:PHE122 4.9 19.0 1.0 O B:HOH535 5.0 24.7 1.0

Chlorine binding site 4 out of 4 in the XAC2383 From Xanthomonas Citri Bound to Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of XAC2383 From Xanthomonas Citri Bound to Chloride Ion within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl402 b:29.3 occ:1.00 O B:HOH570 2.9 26.0 1.0 O B:HOH590 3.1 28.9 1.0 NH1 B:ARG293 3.2 30.9 1.0 NH2 B:ARG284 3.2 28.6 1.0 CB B:SER290 3.8 19.8 1.0 CA B:SER290 3.8 18.9 1.0 CD B:ARG293 3.8 23.8 1.0 CG B:PRO239 4.1 18.9 1.0 CB B:PRO239 4.2 19.0 1.0 N B:SER290 4.2 19.0 1.0 CZ B:ARG293 4.2 24.5 1.0 CG2 B:THR289 4.4 21.9 1.0 NE B:ARG293 4.4 26.8 1.0 CZ B:ARG284 4.5 32.1 1.0 C B:THR289 4.6 18.6 1.0 O B:THR289 4.7 17.4 1.0 OD1 B:ASP121 4.8 23.8 1.0 CG B:ARG293 4.8 24.5 1.0 CB B:ARG293 4.9 22.7 1.0 O B:HOH562 4.9 21.8 1.0 OG B:SER290 5.0 20.0 1.0 CE B:MET113 5.0 19.1 1.0

R.D.Teixeira, C.R.Guzzo, S.J.Arevalo, M.O.Andrade, J.Abrahao, R.F.De Souza, C.S.Farah. A Bipartite Periplasmic Receptor-Diguanylate Cyclase Pair (XAC2383-XAC2382) in the Bacteriumxanthomonas Citri. J. Biol. Chem. V. 293 10767 2018.
ISSN: ESSN 1083-351X
PubMed: 29728456
DOI: 10.1074/JBC.RA118.003475