Chlorine in PDB 5uba: Human Rna Pseudouridylate Synthase Domain Containing 4

Protein crystallography data

The structure of Human Rna Pseudouridylate Synthase Domain Containing 4, PDB code: 5uba was solved by A.Dong, H.Zeng, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.50 / 1.54
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 54.189, 54.189, 105.349, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 21.2

Other elements in 5uba:

The structure of Human Rna Pseudouridylate Synthase Domain Containing 4 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Human Rna Pseudouridylate Synthase Domain Containing 4 (pdb code 5uba). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human Rna Pseudouridylate Synthase Domain Containing 4, PDB code: 5uba:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5uba

Go back to Chlorine Binding Sites List in 5uba
Chlorine binding site 1 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:25.2
occ:1.00
O A:HOH535 3.3 28.3 1.0
N A:ARG272 3.4 14.1 1.0
CA A:HIS269 3.4 19.2 1.0
N A:LEU271 3.4 14.7 1.0
C A:HIS269 3.4 17.7 1.0
CG A:ARG272 3.5 15.7 1.0
CB A:LEU271 3.6 15.2 1.0
CD A:ARG272 3.7 16.4 1.0
O A:HIS269 3.7 16.7 1.0
N A:GLN270 3.8 17.0 1.0
CA A:LEU271 3.9 14.4 1.0
CD2 A:LEU322 3.9 14.5 1.0
CB A:ARG272 4.0 15.5 1.0
C A:LEU271 4.1 14.6 1.0
CG A:LEU271 4.2 16.2 1.0
N A:HIS269 4.2 19.6 1.0
O A:HOH501 4.3 27.1 1.0
CA A:ARG272 4.3 14.7 1.0
C A:GLN270 4.3 15.6 1.0
CB A:HIS269 4.4 19.9 1.0
OD2 A:ASP153 4.6 27.7 1.0
CD1 A:LEU271 4.7 16.8 1.0
CA A:GLN270 4.7 17.3 1.0
CD2 A:HIS269 4.7 21.9 1.0
CG A:HIS269 4.9 20.4 1.0

Chlorine binding site 2 out of 3 in 5uba

Go back to Chlorine Binding Sites List in 5uba
Chlorine binding site 2 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:32.5
occ:1.00
OG1 A:THR304 3.0 23.7 1.0
N A:SER301 3.2 23.3 1.0
O A:HOH688 3.2 41.7 1.0
O A:HOH581 3.2 29.5 1.0
OG A:SER301 3.5 25.2 1.0
CB A:THR304 3.5 21.5 1.0
CB A:SER301 3.6 23.8 1.0
CG1 A:VAL190 3.7 20.2 0.7
CA A:LEU300 3.9 23.6 1.0
CA A:SER301 4.0 23.5 1.0
CG2 A:THR304 4.0 21.0 1.0
C A:LEU300 4.1 23.2 1.0
CD2 A:LEU300 4.1 23.2 1.0
CB A:LEU300 4.4 23.2 1.0
CB A:VAL190 4.6 18.5 0.3
O A:HOH602 4.8 31.5 1.0
CG A:LEU300 4.9 22.2 1.0
CB A:VAL190 4.9 20.0 0.7
O A:LYS299 4.9 28.0 1.0
CA A:THR304 4.9 20.2 1.0
O A:HOH524 5.0 26.2 1.0
O A:SER255 5.0 21.1 1.0
C A:SER301 5.0 23.2 1.0

Chlorine binding site 3 out of 3 in 5uba

Go back to Chlorine Binding Sites List in 5uba
Chlorine binding site 3 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:29.3
occ:1.00
O A:HOH633 3.0 35.9 1.0
N A:LEU345 3.1 17.8 1.0
NH1 A:ARG325 3.4 21.5 1.0
CA A:LYS344 3.7 17.1 1.0
CE A:MET360 3.8 28.0 1.0
C A:LYS344 3.9 16.9 1.0
CB A:LEU345 3.9 17.3 1.0
CB A:LYS344 3.9 19.6 1.0
CG A:LEU345 4.1 17.4 1.0
CA A:LEU345 4.1 17.1 1.0
O A:HOH686 4.2 36.2 1.0
CD1 A:LEU345 4.4 18.2 1.0
CZ A:ARG325 4.4 21.9 1.0
NH2 A:ARG325 4.5 24.3 1.0
O A:LEU345 4.7 19.8 1.0
N A:LYS344 4.9 17.1 1.0
C A:LEU345 4.9 17.0 1.0

Reference:

H.Zeng, A.Dong, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc). The Crystal Structure of Human Pseudouridylate Synthase Domain Containing 4. to Be Published To Be Published.
Page generated: Sat Dec 12 12:30:52 2020

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