Chlorine in PDB 5uba: Human Rna Pseudouridylate Synthase Domain Containing 4

The structure of Human Rna Pseudouridylate Synthase Domain Containing 4, PDB code: 5uba was solved by A.Dong, H.Zeng, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.50 / 1.54
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	54.189, 54.189, 105.349, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 21.2

The structure of Human Rna Pseudouridylate Synthase Domain Containing 4 also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Chlorine atom in the Human Rna Pseudouridylate Synthase Domain Containing 4 (pdb code 5uba). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Human Rna Pseudouridylate Synthase Domain Containing 4, PDB code: 5uba:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:25.2 occ:1.00 O A:HOH535 3.3 28.3 1.0 N A:ARG272 3.4 14.1 1.0 CA A:HIS269 3.4 19.2 1.0 N A:LEU271 3.4 14.7 1.0 C A:HIS269 3.4 17.7 1.0 CG A:ARG272 3.5 15.7 1.0 CB A:LEU271 3.6 15.2 1.0 CD A:ARG272 3.7 16.4 1.0 O A:HIS269 3.7 16.7 1.0 N A:GLN270 3.8 17.0 1.0 CA A:LEU271 3.9 14.4 1.0 CD2 A:LEU322 3.9 14.5 1.0 CB A:ARG272 4.0 15.5 1.0 C A:LEU271 4.1 14.6 1.0 CG A:LEU271 4.2 16.2 1.0 N A:HIS269 4.2 19.6 1.0 O A:HOH501 4.3 27.1 1.0 CA A:ARG272 4.3 14.7 1.0 C A:GLN270 4.3 15.6 1.0 CB A:HIS269 4.4 19.9 1.0 OD2 A:ASP153 4.6 27.7 1.0 CD1 A:LEU271 4.7 16.8 1.0 CA A:GLN270 4.7 17.3 1.0 CD2 A:HIS269 4.7 21.9 1.0 CG A:HIS269 4.9 20.4 1.0

Chlorine binding site 2 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:32.5 occ:1.00 OG1 A:THR304 3.0 23.7 1.0 N A:SER301 3.2 23.3 1.0 O A:HOH688 3.2 41.7 1.0 O A:HOH581 3.2 29.5 1.0 OG A:SER301 3.5 25.2 1.0 CB A:THR304 3.5 21.5 1.0 CB A:SER301 3.6 23.8 1.0 CG1 A:VAL190 3.7 20.2 0.7 CA A:LEU300 3.9 23.6 1.0 CA A:SER301 4.0 23.5 1.0 CG2 A:THR304 4.0 21.0 1.0 C A:LEU300 4.1 23.2 1.0 CD2 A:LEU300 4.1 23.2 1.0 CB A:LEU300 4.4 23.2 1.0 CB A:VAL190 4.6 18.5 0.3 O A:HOH602 4.8 31.5 1.0 CG A:LEU300 4.9 22.2 1.0 CB A:VAL190 4.9 20.0 0.7 O A:LYS299 4.9 28.0 1.0 CA A:THR304 4.9 20.2 1.0 O A:HOH524 5.0 26.2 1.0 O A:SER255 5.0 21.1 1.0 C A:SER301 5.0 23.2 1.0

Chlorine binding site 3 out of 3 in the Human Rna Pseudouridylate Synthase Domain Containing 4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Rna Pseudouridylate Synthase Domain Containing 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:29.3 occ:1.00 O A:HOH633 3.0 35.9 1.0 N A:LEU345 3.1 17.8 1.0 NH1 A:ARG325 3.4 21.5 1.0 CA A:LYS344 3.7 17.1 1.0 CE A:MET360 3.8 28.0 1.0 C A:LYS344 3.9 16.9 1.0 CB A:LEU345 3.9 17.3 1.0 CB A:LYS344 3.9 19.6 1.0 CG A:LEU345 4.1 17.4 1.0 CA A:LEU345 4.1 17.1 1.0 O A:HOH686 4.2 36.2 1.0 CD1 A:LEU345 4.4 18.2 1.0 CZ A:ARG325 4.4 21.9 1.0 NH2 A:ARG325 4.5 24.3 1.0 O A:LEU345 4.7 19.8 1.0 N A:LYS344 4.9 17.1 1.0 C A:LEU345 4.9 17.0 1.0

H.Zeng, A.Dong, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc). The Crystal Structure of Human Pseudouridylate Synthase Domain Containing 4. to Be Published To Be Published.