Chlorine in PDB 5ue9: Wt Dhodb with Orotate Bound

Enzymatic activity of Wt Dhodb with Orotate Bound

All present enzymatic activity of Wt Dhodb with Orotate Bound:
1.3.1.14;

Protein crystallography data

The structure of Wt Dhodb with Orotate Bound, PDB code: 5ue9 was solved by Y.A.Pompeu, J.D.Stewart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.39 / 2.72
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 80.207, 151.911, 214.799, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 25.4

Other elements in 5ue9:

The structure of Wt Dhodb with Orotate Bound also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Wt Dhodb with Orotate Bound (pdb code 5ue9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Wt Dhodb with Orotate Bound, PDB code: 5ue9:

Chlorine binding site 1 out of 1 in 5ue9

Go back to Chlorine Binding Sites List in 5ue9
Chlorine binding site 1 out of 1 in the Wt Dhodb with Orotate Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Wt Dhodb with Orotate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:37.2
occ:1.00
O A:HOH523 3.2 36.6 1.0
N A:HIS53 3.3 33.5 1.0
NH1 A:ARG55 3.5 37.9 1.0
CB A:THR51 3.6 31.4 1.0
CB A:HIS53 3.7 41.5 1.0
O A:HIS53 3.7 38.6 1.0
OG1 A:THR51 3.7 25.5 1.0
ND1 A:HIS53 3.8 42.0 1.0
N A:LEU52 3.8 34.6 1.0
CD A:ARG55 3.9 25.4 1.0
CA A:HIS53 3.9 39.7 1.0
CG A:HIS53 4.1 42.4 1.0
C A:HIS53 4.2 33.8 1.0
C A:LEU52 4.3 33.2 1.0
CG A:ARG55 4.4 28.3 1.0
C A:THR51 4.4 31.9 1.0
CA A:LEU52 4.4 32.7 1.0
O A:HOH541 4.4 33.5 1.0
CB A:LEU52 4.4 34.3 1.0
CZ A:ARG55 4.5 39.6 1.0
CG2 A:THR51 4.6 28.2 1.0
CA A:THR51 4.6 31.7 1.0
NE A:ARG55 4.6 40.1 1.0
CE1 A:HIS53 4.9 47.4 1.0
OG A:SER108 4.9 46.6 1.0

Reference:

Y.A.Pompeu, J.D.Stewart. Isoleucine 74 Plays A Key Role in Controlling Electron Transfer Between Lactococcus Lactis Dihydroorotate Dehydrogenase 1B Subunits To Be Published.
Page generated: Sat Dec 12 12:31:03 2020

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