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Chlorine in PDB 5ueu: BRD4_BD2_A-1107604

Protein crystallography data

The structure of BRD4_BD2_A-1107604, PDB code: 5ueu was solved by C.H.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.22 / 2.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.826, 64.544, 75.287, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the BRD4_BD2_A-1107604 (pdb code 5ueu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the BRD4_BD2_A-1107604, PDB code: 5ueu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5ueu

Go back to Chlorine Binding Sites List in 5ueu
Chlorine binding site 1 out of 2 in the BRD4_BD2_A-1107604


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of BRD4_BD2_A-1107604 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:33.9
occ:1.00
CL1 A:0S6501 0.0 33.9 1.0
C15 A:0S6501 1.7 31.9 1.0
C13 A:0S6501 2.7 31.1 1.0
C16 A:0S6501 2.7 30.8 1.0
H1 A:0S6501 2.8 30.9 1.0
H3 A:0S6501 2.8 30.5 1.0
CG A:GLU438 3.6 36.5 1.0
SD A:MET442 3.8 34.0 1.0
CB A:GLU438 4.0 30.9 1.0
C14 A:0S6501 4.0 33.1 1.0
C17 A:0S6501 4.0 31.4 1.0
C12 A:0S6501 4.5 33.0 1.0
CE A:MET442 4.5 30.6 1.0
CZ2 A:TRP374 4.6 32.9 1.0
H4 A:0S6501 4.8 33.3 1.0
H2 A:0S6501 4.8 31.6 1.0
N A:VAL439 4.8 26.4 1.0
C A:GLU438 4.9 31.3 1.0
CD A:GLU438 5.0 50.9 1.0

Chlorine binding site 2 out of 2 in 5ueu

Go back to Chlorine Binding Sites List in 5ueu
Chlorine binding site 2 out of 2 in the BRD4_BD2_A-1107604


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of BRD4_BD2_A-1107604 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:42.4
occ:1.00
CL1 B:0S6501 0.0 42.4 1.0
C15 B:0S6501 1.7 38.4 1.0
C13 B:0S6501 2.6 34.8 1.0
C16 B:0S6501 2.7 37.2 1.0
H3 B:0S6501 2.8 34.4 1.0
H1 B:0S6501 2.9 37.2 1.0
OE1 B:GLU438 3.2 86.0 1.0
CD B:GLU438 3.4 83.8 1.0
CG B:GLU438 3.6 51.6 1.0
CB B:GLU438 3.8 35.5 1.0
SD B:MET442 3.9 40.0 1.0
C14 B:0S6501 3.9 34.3 1.0
OE2 B:GLU438 4.0 79.5 1.0
C17 B:0S6501 4.0 35.4 1.0
C12 B:0S6501 4.5 35.1 1.0
CZ2 B:TRP374 4.6 31.1 1.0
N B:VAL439 4.7 30.0 1.0
CE B:MET442 4.7 36.2 1.0
H4 B:0S6501 4.8 34.4 1.0
O B:HOH686 4.8 52.5 1.0
C B:GLU438 4.8 35.7 1.0
H2 B:0S6501 4.8 35.5 1.0
CA B:GLU438 4.9 33.9 1.0

Reference:

L.Wang, J.K.Pratt, T.Soltwedel, G.S.Sheppard, S.D.Fidanze, D.Liu, L.A.Hasvold, R.A.Mantei, J.H.Holms, W.J.Mcclellan, M.D.Wendt, C.Wada, R.Frey, T.M.Hansen, R.Hubbard, C.H.Park, L.Li, T.J.Magoc, D.H.Albert, X.Lin, S.E.Warder, P.Kovar, X.Huang, D.Wilcox, R.Wang, G.Rajaraman, A.M.Petros, C.W.Hutchins, S.C.Panchal, C.Sun, S.W.Elmore, Y.Shen, W.M.Kati, K.F.Mcdaniel. Fragment-Based, Structure-Enabled Discovery of Novel Pyridones and Pyridone Macrocycles As Potent Bromodomain and Extra-Terminal Domain (Bet) Family Bromodomain Inhibitors. J. Med. Chem. V. 60 3828 2017.
ISSN: ISSN 1520-4804
PubMed: 28368119
DOI: 10.1021/ACS.JMEDCHEM.7B00017
Page generated: Fri Jul 26 18:04:00 2024

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