Chlorine in PDB 5ujk: Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad

Enzymatic activity of Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad

All present enzymatic activity of Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad:
1.1.1.37;

Protein crystallography data

The structure of Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad, PDB code: 5ujk was solved by J.M.Gonzalez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.09 / 1.53
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 108.189, 108.189, 104.321, 90.00, 90.00, 120.00
R / Rfree (%) 12.4 / 17.7

Other elements in 5ujk:

The structure of Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad (pdb code 5ujk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad, PDB code: 5ujk:

Chlorine binding site 1 out of 1 in 5ujk

Go back to Chlorine Binding Sites List in 5ujk
Chlorine binding site 1 out of 1 in the Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Malate Dehydrogenase From Methylobacterium Extorquens, Complexed with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:33.4
occ:1.00
 O A:HOH574 2.8 34.3 1.0
NH2 A:ARG154 3.2 18.7 1.0
NH2 A:ARG252 3.5 23.9 1.0
NH1 A:ARG154 3.5 17.4 1.0
O A:HOH737 3.5 32.5 1.0
CZ A:ARG154 3.7 16.6 1.0
CD2 A:LEU254 4.1 21.9 1.0
NH1 A:ARG252 4.2 23.5 1.0
CZ A:ARG252 4.3 20.8 1.0
CG1 A:VAL147 4.3 14.8 1.0
O A:HOH741 4.4 36.4 1.0

Reference:

J.M.Gonzalez, R.Marti-Arbona, J.C.H.Chen, B.Broom-Peltz, C.J.Unkefer. Conformational Changes on Substrate Binding Revealed By Structures of Methylobacterium Extorquens Malate Dehydrogenase. Acta Crystallogr F Struct V. 74 610 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30279311
DOI: 10.1107/S2053230X18011809
Page generated: Sat Dec 12 12:31:21 2020

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