Chlorine in PDB 5uu3: Insulin with Proline Analog Dfp at Position B28 in the R6 State
Protein crystallography data
The structure of Insulin with Proline Analog Dfp at Position B28 in the R6 State, PDB code: 5uu3
was solved by
S.A.Lieblich,
K.Y.Fang,
D.A.Tirrell,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.90 /
2.25
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.599,
47.425,
78.705,
89.96,
89.93,
73.41
|
R / Rfree (%)
|
24.3 /
29.2
|
Other elements in 5uu3:
The structure of Insulin with Proline Analog Dfp at Position B28 in the R6 State also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Insulin with Proline Analog Dfp at Position B28 in the R6 State
(pdb code 5uu3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Insulin with Proline Analog Dfp at Position B28 in the R6 State, PDB code: 5uu3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 5uu3
Go back to
Chlorine Binding Sites List in 5uu3
Chlorine binding site 1 out
of 4 in the Insulin with Proline Analog Dfp at Position B28 in the R6 State
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Insulin with Proline Analog Dfp at Position B28 in the R6 State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl102
b:39.1
occ:1.00
|
ZN
|
D:ZN101
|
2.1
|
35.9
|
1.0
|
NE2
|
H:HIS10
|
3.4
|
42.4
|
1.0
|
NE2
|
L:HIS10
|
3.4
|
35.6
|
1.0
|
NE2
|
D:HIS10
|
3.4
|
37.4
|
1.0
|
CD2
|
D:HIS10
|
3.8
|
39.3
|
1.0
|
CD2
|
H:HIS10
|
3.9
|
46.4
|
1.0
|
CD2
|
L:HIS10
|
3.9
|
35.4
|
1.0
|
CB
|
D:LEU6
|
3.9
|
53.1
|
1.0
|
CB
|
L:LEU6
|
3.9
|
44.0
|
1.0
|
CB
|
H:LEU6
|
4.0
|
46.4
|
1.0
|
CD1
|
D:LEU6
|
4.1
|
55.2
|
1.0
|
CD1
|
L:LEU6
|
4.1
|
47.6
|
1.0
|
CD1
|
H:LEU6
|
4.2
|
48.4
|
1.0
|
CE1
|
H:HIS10
|
4.5
|
40.5
|
1.0
|
CG
|
D:LEU6
|
4.5
|
54.9
|
1.0
|
CG
|
L:LEU6
|
4.6
|
46.9
|
1.0
|
CE1
|
L:HIS10
|
4.6
|
34.5
|
1.0
|
CE1
|
D:HIS10
|
4.6
|
35.3
|
1.0
|
CG
|
H:LEU6
|
4.7
|
47.1
|
1.0
|
O
|
L:LEU6
|
4.9
|
40.5
|
1.0
|
C
|
L:LEU6
|
4.9
|
41.7
|
1.0
|
C
|
D:LEU6
|
4.9
|
52.4
|
1.0
|
O
|
D:LEU6
|
4.9
|
52.8
|
1.0
|
CA
|
L:LEU6
|
4.9
|
44.4
|
1.0
|
CA
|
D:LEU6
|
4.9
|
53.6
|
1.0
|
C
|
H:LEU6
|
5.0
|
54.0
|
1.0
|
O
|
H:LEU6
|
5.0
|
51.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 5uu3
Go back to
Chlorine Binding Sites List in 5uu3
Chlorine binding site 2 out
of 4 in the Insulin with Proline Analog Dfp at Position B28 in the R6 State
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Insulin with Proline Analog Dfp at Position B28 in the R6 State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl101
b:63.9
occ:1.00
|
ZN
|
B:ZN301
|
2.1
|
47.2
|
1.0
|
NE2
|
F:HIS10
|
3.2
|
67.1
|
1.0
|
NE2
|
J:HIS10
|
3.3
|
57.6
|
1.0
|
NE2
|
B:HIS10
|
3.6
|
64.3
|
1.0
|
CD2
|
F:HIS10
|
3.7
|
64.7
|
1.0
|
CB
|
J:LEU6
|
3.7
|
63.6
|
1.0
|
CD2
|
J:HIS10
|
3.7
|
56.6
|
1.0
|
CB
|
B:LEU6
|
4.0
|
82.7
|
1.0
|
CD1
|
J:LEU6
|
4.0
|
69.0
|
1.0
|
CD1
|
B:LEU6
|
4.0
|
87.5
|
1.0
|
CD2
|
B:HIS10
|
4.1
|
66.8
|
1.0
|
CE1
|
F:HIS10
|
4.3
|
64.1
|
1.0
|
CB
|
F:LEU6
|
4.3
|
81.8
|
1.0
|
CG
|
J:LEU6
|
4.4
|
66.0
|
1.0
|
CG
|
B:LEU6
|
4.5
|
85.3
|
1.0
|
CE1
|
J:HIS10
|
4.5
|
56.4
|
1.0
|
O
|
J:LEU6
|
4.5
|
57.0
|
1.0
|
CD1
|
F:LEU6
|
4.6
|
92.6
|
1.0
|
C
|
J:LEU6
|
4.6
|
59.1
|
1.0
|
CA
|
J:LEU6
|
4.7
|
60.9
|
1.0
|
CE1
|
B:HIS10
|
4.7
|
61.3
|
1.0
|
CD2
|
J:LEU6
|
4.8
|
64.9
|
1.0
|
CD2
|
B:LEU6
|
4.8
|
80.7
|
1.0
|
CG
|
F:HIS10
|
5.0
|
60.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 5uu3
Go back to
Chlorine Binding Sites List in 5uu3
Chlorine binding site 3 out
of 4 in the Insulin with Proline Analog Dfp at Position B28 in the R6 State
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Insulin with Proline Analog Dfp at Position B28 in the R6 State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Cl302
b:46.6
occ:1.00
|
ZN
|
N:ZN301
|
2.2
|
38.7
|
1.0
|
NE2
|
R:HIS10
|
3.3
|
38.1
|
1.0
|
NE2
|
V:HIS10
|
3.5
|
52.6
|
1.0
|
NE2
|
N:HIS10
|
3.5
|
39.7
|
1.0
|
CB
|
V:LEU6
|
3.8
|
68.6
|
1.0
|
CD2
|
R:HIS10
|
3.9
|
42.1
|
1.0
|
CD2
|
V:HIS10
|
3.9
|
54.5
|
1.0
|
CB
|
N:LEU6
|
4.0
|
51.2
|
1.0
|
CD1
|
V:LEU6
|
4.0
|
70.6
|
1.0
|
CB
|
R:LEU6
|
4.0
|
50.9
|
1.0
|
CD2
|
N:HIS10
|
4.1
|
39.1
|
1.0
|
CD1
|
N:LEU6
|
4.1
|
53.8
|
1.0
|
CD1
|
R:LEU6
|
4.2
|
51.0
|
1.0
|
CG
|
V:LEU6
|
4.4
|
71.7
|
1.0
|
CE1
|
R:HIS10
|
4.4
|
39.6
|
1.0
|
CG
|
N:LEU6
|
4.5
|
55.1
|
1.0
|
CE1
|
N:HIS10
|
4.6
|
40.0
|
1.0
|
CE1
|
V:HIS10
|
4.6
|
50.5
|
1.0
|
CG
|
R:LEU6
|
4.7
|
50.8
|
1.0
|
O
|
V:LEU6
|
4.8
|
63.3
|
1.0
|
C
|
V:LEU6
|
4.8
|
66.5
|
1.0
|
CA
|
V:LEU6
|
4.8
|
69.6
|
1.0
|
O
|
R:LEU6
|
4.9
|
56.9
|
1.0
|
CD2
|
V:LEU6
|
4.9
|
71.0
|
1.0
|
C
|
R:LEU6
|
5.0
|
58.0
|
1.0
|
O
|
N:LEU6
|
5.0
|
48.9
|
1.0
|
CA
|
N:LEU6
|
5.0
|
52.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 5uu3
Go back to
Chlorine Binding Sites List in 5uu3
Chlorine binding site 4 out
of 4 in the Insulin with Proline Analog Dfp at Position B28 in the R6 State
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Insulin with Proline Analog Dfp at Position B28 in the R6 State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Cl102
b:41.8
occ:1.00
|
ZN
|
P:ZN101
|
2.1
|
39.5
|
1.0
|
NE2
|
P:HIS10
|
3.3
|
48.2
|
1.0
|
NE2
|
T:HIS10
|
3.3
|
44.4
|
1.0
|
NE2
|
X:HIS10
|
3.4
|
47.2
|
1.0
|
CD2
|
P:HIS10
|
3.7
|
46.8
|
1.0
|
CD2
|
T:HIS10
|
3.8
|
45.2
|
1.0
|
CD2
|
X:HIS10
|
3.9
|
54.2
|
1.0
|
CB
|
P:LEU6
|
4.0
|
58.2
|
1.0
|
CB
|
X:LEU6
|
4.0
|
60.5
|
1.0
|
CB
|
T:LEU6
|
4.0
|
59.3
|
1.0
|
CD1
|
X:LEU6
|
4.2
|
51.5
|
1.0
|
CD1
|
T:LEU6
|
4.3
|
63.5
|
1.0
|
CD1
|
P:LEU6
|
4.3
|
64.8
|
1.0
|
CE1
|
T:HIS10
|
4.4
|
41.3
|
1.0
|
CE1
|
P:HIS10
|
4.4
|
46.9
|
1.0
|
CE1
|
X:HIS10
|
4.6
|
46.1
|
1.0
|
CG
|
X:LEU6
|
4.6
|
54.7
|
1.0
|
CG
|
P:LEU6
|
4.7
|
61.3
|
1.0
|
CG
|
T:LEU6
|
4.7
|
62.8
|
1.0
|
O
|
P:LEU6
|
4.8
|
54.9
|
1.0
|
C
|
P:LEU6
|
4.8
|
55.3
|
1.0
|
O
|
X:LEU6
|
4.9
|
78.7
|
1.0
|
O
|
T:LEU6
|
4.9
|
52.7
|
1.0
|
C
|
X:LEU6
|
4.9
|
79.0
|
1.0
|
CA
|
P:LEU6
|
4.9
|
55.5
|
1.0
|
C
|
T:LEU6
|
5.0
|
55.6
|
1.0
|
CA
|
X:LEU6
|
5.0
|
73.7
|
1.0
|
CG
|
P:HIS10
|
5.0
|
44.6
|
1.0
|
CD2
|
X:LEU6
|
5.0
|
53.6
|
1.0
|
|
Reference:
S.A.Lieblich,
K.Y.Fang,
D.A.Tirrell.
Insulin with Proline Analog Dfp at Position B28 in the R6 State To Be Published.
Page generated: Fri Jul 26 18:18:16 2024
|