Chlorine in PDB 5uvj: Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

Enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation

All present enzymatic activity of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj was solved by J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketawala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.100, 79.100, 38.000, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 26.8

Other elements in 5uvj:

The structure of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation (pdb code 5uvj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation, PDB code: 5uvj:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 1 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:54.7
occ:1.00
O A:HOH310 2.9 34.2 1.0
N A:THR69 3.2 37.7 1.0
OD1 A:ASN65 3.2 35.6 1.0
O A:THR69 3.4 40.9 1.0
N A:GLY67 3.5 30.2 1.0
CA A:GLY67 3.5 31.9 1.0
N A:ARG68 3.5 31.7 1.0
C A:GLY67 3.6 32.1 1.0
C A:THR69 3.7 42.0 1.0
OG A:SER72 3.8 37.1 1.0
CA A:THR69 3.8 38.6 1.0
CB A:THR69 4.2 34.2 1.0
OD1 A:ASP66 4.2 32.1 1.0
C A:ARG68 4.2 34.7 1.0
O A:GLY67 4.2 36.8 1.0
O A:HOH318 4.3 31.5 1.0
CA A:ARG68 4.3 32.9 1.0
CG A:ASN65 4.4 32.4 1.0
N A:ASP66 4.5 28.9 1.0
N A:PRO70 4.5 47.0 1.0
C A:ASP66 4.6 30.1 1.0
NA A:NA204 4.7 36.8 1.0
OG1 A:THR69 4.9 29.4 1.0

Chlorine binding site 2 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 2 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:34.1
occ:1.00
OH A:TYR23 2.9 28.0 1.0
CZ A:TYR23 3.6 25.6 1.0
CE2 A:TYR23 3.7 25.1 1.0
CA A:GLY104 4.2 33.9 1.0
O A:ARG21 4.7 34.3 1.0
N A:GLY104 4.8 33.5 1.0
CE1 A:TYR23 4.8 26.3 1.0
CD2 A:TYR23 4.9 24.9 1.0

Chlorine binding site 3 out of 3 in 5uvj

Go back to Chlorine Binding Sites List in 5uvj
Chlorine binding site 3 out of 3 in the Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-Crystals Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:57.1
occ:1.00
OG A:SER24 2.9 34.4 1.0
N A:GLY26 3.1 22.5 1.0
CA A:GLY26 3.4 22.2 1.0
CB A:SER24 3.4 28.6 1.0
CA A:GLN121 3.5 41.9 1.0
N A:GLN121 3.9 37.8 1.0
CB A:GLN121 3.9 48.3 1.0
CD1 A:ILE124 4.0 42.9 1.0
N A:LEU25 4.1 26.1 1.0
CG A:GLN121 4.1 59.6 1.0
C A:SER24 4.2 28.1 1.0
C A:VAL120 4.3 35.9 1.0
CG2 A:VAL120 4.3 30.0 1.0
C A:LEU25 4.3 24.2 1.0
O A:VAL120 4.3 37.1 1.0
CG1 A:ILE124 4.3 41.5 1.0
CA A:SER24 4.4 28.7 1.0
C A:GLY26 4.5 22.5 1.0
O A:SER24 4.6 27.6 1.0
N A:ASN27 4.7 22.6 1.0
CA A:LEU25 4.7 26.1 1.0
C A:GLN121 4.8 36.3 1.0
O A:GLN121 5.0 33.2 1.0

Reference:

J.M.Martin-Garcia, C.E.Conrad, G.Nelson, N.Stander, N.A.Zatsepin, J.Zook, L.Zhu, J.Geiger, E.Chun, D.Kissick, M.C.Hilgart, C.Ogata, A.Ishchenko, N.Nagaratnam, S.Roy-Chowdhury, J.Coe, G.Subramanian, A.Schaffer, D.James, G.Ketwala, N.Venugopalan, S.Xu, S.Corcoran, D.Ferguson, U.Weierstall, J.C.H.Spence, V.Cherezov, P.Fromme, R.F.Fischetti, W.Liu. Serial Millisecond Crystallography of Membrane and Soluble Protein Microcrystals Using Synchrotron Radiation. Iucrj V. 4 439 2017.
ISSN: ESSN 2052-2525
PubMed: 28875031
DOI: 10.1107/S205225251700570X
Page generated: Sat Dec 12 12:32:30 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy