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Chlorine in PDB 5uzc: Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221

Enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221

All present enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221, PDB code: 5uzc was solved by N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.51 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 128.017, 119.305, 97.199, 90.00, 102.83, 90.00
R / Rfree (%) 17.1 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 (pdb code 5uzc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221, PDB code: 5uzc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5uzc

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Chlorine binding site 1 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:38.6
occ:1.00
 CL1 A:8N1502 0.0 38.6 1.0
C20 A:8N1502 1.8 38.5 1.0
C21 A:8N1502 2.7 40.8 1.0
C19 A:8N1502 2.8 35.8 1.0
N1 A:8N1502 3.0 47.2 1.0
O D:GLY439 3.5 29.4 1.0
C D:GLY439 3.5 29.7 1.0
CD2 A:HIS249 3.7 32.1 1.0
CA D:GLY439 3.7 30.8 1.0
O D:VAL23 3.9 41.3 1.0
C22 A:8N1502 4.0 37.5 1.0
N D:TYR440 4.1 28.6 1.0
C18 A:8N1502 4.1 34.6 1.0
CB A:HIS249 4.1 31.2 1.0
CD D:PRO25 4.1 43.0 1.0
OG D:SER21 4.2 36.4 1.0
CG A:HIS249 4.2 31.4 1.0
C24 A:8N1502 4.4 55.1 1.0
CG D:PRO25 4.6 41.6 1.0
O5 A:8N1502 4.6 57.1 1.0
C17 A:8N1502 4.6 35.6 1.0
CB D:SER21 4.6 33.7 1.0
CA D:TYR440 4.6 27.5 1.0
CA D:LEU24 4.8 41.8 1.0
NE2 A:HIS249 4.9 31.4 1.0
N D:PRO25 4.9 42.5 1.0
C25 A:8N1502 5.0 57.8 1.0
C D:VAL23 5.0 41.9 1.0
CD2 D:LEU24 5.0 44.2 1.0

Chlorine binding site 2 out of 6 in 5uzc

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Chlorine binding site 2 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:45.5
occ:0.26
 CL1 B:8N1502 0.0 45.5 0.3
CL1 B:8N1502 0.1 45.0 0.7
C20 B:8N1502 1.8 45.9 0.7
C20 B:8N1502 1.8 46.0 0.3
C21 B:8N1502 2.7 47.6 0.7
C21 B:8N1502 2.7 47.7 0.3
C19 B:8N1502 2.8 45.8 0.7
C19 B:8N1502 2.8 45.8 0.3
N1 B:8N1502 3.0 50.4 0.7
N1 B:8N1502 3.0 50.4 0.3
O A:GLY439 3.3 38.7 1.0
C A:GLY439 3.4 37.1 1.0
CA A:GLY439 3.7 37.6 1.0
CD2 B:HIS249 3.7 34.9 1.0
N A:TYR440 3.9 35.2 1.0
CD A:PRO25 4.0 46.1 1.0
C22 B:8N1502 4.0 45.7 0.7
C22 B:8N1502 4.0 45.8 0.3
O A:VAL23 4.0 50.5 1.0
C18 B:8N1502 4.1 44.9 0.7
C18 B:8N1502 4.1 45.0 0.3
CB B:HIS249 4.1 33.7 1.0
O6 B:8N1502 4.3 57.6 0.3
CG B:HIS249 4.3 34.3 1.0
OG A:SER21 4.3 43.1 1.0
CG A:PRO25 4.4 44.6 1.0
C24 B:8N1502 4.4 54.8 0.7
C24 B:8N1502 4.4 54.7 0.3
CA A:TYR440 4.5 37.3 1.0
C17 B:8N1502 4.6 45.0 0.7
O5 B:8N1502 4.6 55.9 0.3
C17 B:8N1502 4.6 45.0 0.3
O5 B:8N1502 4.6 56.2 0.7
CB A:SER21 4.7 40.5 1.0
N A:PRO25 4.9 46.1 1.0
NE2 B:HIS249 4.9 34.7 1.0
CA A:LEU24 4.9 53.2 1.0
C25 B:8N1502 5.0 56.5 0.3
C25 B:8N1502 5.0 56.7 0.7

Chlorine binding site 3 out of 6 in 5uzc

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Chlorine binding site 3 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:45.0
occ:0.74
 CL1 B:8N1502 0.0 45.0 0.7
CL1 B:8N1502 0.1 45.5 0.3
C20 B:8N1502 1.8 45.9 0.7
C20 B:8N1502 1.8 46.0 0.3
C21 B:8N1502 2.7 47.6 0.7
C21 B:8N1502 2.8 47.7 0.3
C19 B:8N1502 2.8 45.8 0.7
C19 B:8N1502 2.8 45.8 0.3
N1 B:8N1502 2.9 50.4 0.7
N1 B:8N1502 3.0 50.4 0.3
O A:GLY439 3.3 38.7 1.0
C A:GLY439 3.4 37.1 1.0
CA A:GLY439 3.7 37.6 1.0
CD2 B:HIS249 3.8 34.9 1.0
N A:TYR440 3.9 35.2 1.0
CD A:PRO25 3.9 46.1 1.0
O A:VAL23 4.0 50.5 1.0
C22 B:8N1502 4.0 45.7 0.7
C22 B:8N1502 4.1 45.8 0.3
C18 B:8N1502 4.1 44.9 0.7
C18 B:8N1502 4.1 45.0 0.3
CB B:HIS249 4.2 33.7 1.0
O6 B:8N1502 4.2 57.6 0.3
OG A:SER21 4.3 43.1 1.0
CG B:HIS249 4.3 34.3 1.0
CG A:PRO25 4.4 44.6 1.0
C24 B:8N1502 4.4 54.8 0.7
C24 B:8N1502 4.4 54.7 0.3
CA A:TYR440 4.5 37.3 1.0
O5 B:8N1502 4.6 55.9 0.3
C17 B:8N1502 4.6 45.0 0.7
C17 B:8N1502 4.6 45.0 0.3
O5 B:8N1502 4.6 56.2 0.7
CB A:SER21 4.7 40.5 1.0
N A:PRO25 4.9 46.1 1.0
CA A:LEU24 4.9 53.2 1.0
C25 B:8N1502 5.0 56.5 0.3
NE2 B:HIS249 5.0 34.7 1.0
C25 B:8N1502 5.0 56.7 0.7

Chlorine binding site 4 out of 6 in 5uzc

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Chlorine binding site 4 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:52.4
occ:0.39
 CL1 C:8N1501 0.0 52.4 0.4
CL1 C:8N1501 0.1 52.4 0.6
C20 C:8N1501 1.8 53.2 0.4
C20 C:8N1501 1.8 53.2 0.6
C21 C:8N1501 2.7 54.3 0.6
C21 C:8N1501 2.8 54.3 0.4
C19 C:8N1501 2.8 52.4 0.4
C19 C:8N1501 2.8 52.4 0.6
N1 C:8N1501 2.9 57.5 0.6
N1 C:8N1501 3.0 57.5 0.4
O B:GLY439 3.4 37.5 1.0
C B:GLY439 3.4 36.8 1.0
CD2 C:HIS249 3.7 36.0 1.0
CA B:GLY439 3.7 36.6 1.0
O B:VAL23 3.8 50.4 1.0
CD B:PRO25 4.0 47.1 1.0
C22 C:8N1501 4.0 52.6 0.6
C22 C:8N1501 4.1 52.7 0.4
N B:TYR440 4.1 36.2 1.0
C18 C:8N1501 4.1 51.9 0.4
C18 C:8N1501 4.1 51.8 0.6
CB C:HIS249 4.1 37.3 1.0
OG B:SER21 4.2 42.1 1.0
CG C:HIS249 4.2 35.8 1.0
O6 C:8N1501 4.2 65.0 0.4
O5 C:8N1501 4.3 64.8 0.4
C24 C:8N1501 4.4 60.4 0.6
C24 C:8N1501 4.4 60.4 0.4
CG B:PRO25 4.5 45.6 1.0
C17 C:8N1501 4.6 52.1 0.6
C17 C:8N1501 4.6 52.1 0.4
CA B:TYR440 4.6 36.4 1.0
CB B:SER21 4.6 41.6 1.0
O5 C:8N1501 4.7 65.6 0.6
CA B:LEU24 4.8 51.1 1.0
NE2 C:HIS249 4.9 35.2 1.0
C B:VAL23 4.9 52.2 1.0
N B:PRO25 4.9 47.0 1.0
C25 C:8N1501 5.0 62.5 0.4
O3 C:8N1501 5.0 62.3 0.6
C25 C:8N1501 5.0 62.5 0.6

Chlorine binding site 5 out of 6 in 5uzc

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Chlorine binding site 5 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:52.4
occ:0.61
 CL1 C:8N1501 0.0 52.4 0.6
CL1 C:8N1501 0.1 52.4 0.4
C20 C:8N1501 1.8 53.2 0.4
C20 C:8N1501 1.8 53.2 0.6
C21 C:8N1501 2.7 54.3 0.6
C21 C:8N1501 2.8 54.3 0.4
C19 C:8N1501 2.8 52.4 0.4
C19 C:8N1501 2.8 52.4 0.6
N1 C:8N1501 2.9 57.5 0.6
N1 C:8N1501 3.0 57.5 0.4
O B:GLY439 3.4 37.5 1.0
C B:GLY439 3.4 36.8 1.0
CD2 C:HIS249 3.6 36.0 1.0
CA B:GLY439 3.7 36.6 1.0
O B:VAL23 3.8 50.4 1.0
CB C:HIS249 4.0 37.3 1.0
C22 C:8N1501 4.0 52.6 0.6
N B:TYR440 4.0 36.2 1.0
C22 C:8N1501 4.0 52.7 0.4
C18 C:8N1501 4.1 51.8 0.6
C18 C:8N1501 4.1 51.9 0.4
CD B:PRO25 4.1 47.1 1.0
CG C:HIS249 4.1 35.8 1.0
OG B:SER21 4.2 42.1 1.0
O6 C:8N1501 4.2 65.0 0.4
O5 C:8N1501 4.3 64.8 0.4
C24 C:8N1501 4.4 60.4 0.6
C24 C:8N1501 4.4 60.4 0.4
CA B:TYR440 4.5 36.4 1.0
CG B:PRO25 4.6 45.6 1.0
C17 C:8N1501 4.6 52.1 0.6
C17 C:8N1501 4.6 52.1 0.4
CB B:SER21 4.6 41.6 1.0
O5 C:8N1501 4.6 65.6 0.6
NE2 C:HIS249 4.8 35.2 1.0
C25 C:8N1501 4.9 62.5 0.4
CA B:LEU24 4.9 51.1 1.0
C25 C:8N1501 5.0 62.5 0.6
O3 C:8N1501 5.0 62.3 0.6
C B:VAL23 5.0 52.2 1.0

Chlorine binding site 6 out of 6 in 5uzc

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Chlorine binding site 6 out of 6 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl501

b:48.6
occ:1.00
 CL1 D:8N1501 0.0 48.6 1.0
C20 D:8N1501 1.8 47.8 1.0
C21 D:8N1501 2.7 50.8 1.0
C19 D:8N1501 2.8 45.3 1.0
N1 D:8N1501 2.9 56.1 1.0
O C:GLY439 3.5 36.9 1.0
C C:GLY439 3.6 38.6 1.0
CD2 D:HIS249 3.6 38.1 1.0
O C:VAL23 3.7 51.9 1.0
CA C:GLY439 3.8 38.7 1.0
CD C:PRO25 4.0 52.2 1.0
C22 D:8N1501 4.0 47.4 1.0
CB D:HIS249 4.1 38.6 1.0
C18 D:8N1501 4.1 45.5 1.0
N C:TYR440 4.1 36.2 1.0
OG C:SER21 4.2 42.5 1.0
CG D:HIS249 4.2 37.7 1.0
O5 D:8N1501 4.2 66.1 1.0
C24 D:8N1501 4.4 61.9 1.0
C17 D:8N1501 4.6 45.2 1.0
CG C:PRO25 4.6 50.4 1.0
CB C:SER21 4.6 41.3 1.0
CA C:TYR440 4.7 35.5 1.0
CA C:LEU24 4.8 56.5 1.0
C C:VAL23 4.8 53.5 1.0
NE2 D:HIS249 4.8 37.6 1.0
C25 D:8N1501 4.9 66.0 1.0
O3 D:8N1501 5.0 65.1 1.0
N C:PRO25 5.0 53.1 1.0

Reference:

N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P221 To Be Published.
Page generated: Fri Jul 26 18:27:39 2024

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