Chlorine in PDB 5uzx: Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
Protein crystallography data
The structure of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp, PDB code: 5uzx
was solved by
Seattle Structural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.20 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.400,
76.150,
65.480,
90.00,
109.86,
90.00
|
R / Rfree (%)
|
16.5 /
19.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
(pdb code 5uzx). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp, PDB code: 5uzx:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 5uzx
Go back to
Chlorine Binding Sites List in 5uzx
Chlorine binding site 1 out
of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:38.6
occ:1.00
|
O2B
|
A:NAP301
|
2.8
|
20.7
|
0.7
|
N3A
|
A:NAP301
|
2.9
|
17.5
|
0.7
|
O
|
A:HOH440
|
3.2
|
22.9
|
1.0
|
OG
|
A:SER17
|
3.4
|
26.5
|
1.0
|
C1B
|
A:NAP301
|
3.6
|
20.3
|
0.7
|
C2B
|
A:NAP301
|
3.7
|
18.1
|
0.7
|
C2A
|
A:NAP301
|
3.7
|
21.3
|
0.7
|
O3B
|
A:NAP301
|
3.7
|
20.3
|
0.7
|
CA
|
A:GLY15
|
3.7
|
19.0
|
1.0
|
N
|
A:ARG40
|
3.7
|
21.0
|
1.0
|
CA
|
A:VAL39
|
3.7
|
19.7
|
1.0
|
O
|
A:HOH489
|
3.7
|
33.8
|
1.0
|
O1X
|
A:NAP301
|
3.8
|
21.1
|
0.7
|
C4A
|
A:NAP301
|
3.8
|
16.4
|
0.7
|
P2B
|
A:NAP301
|
3.8
|
20.6
|
0.7
|
O
|
A:THR38
|
3.9
|
22.6
|
1.0
|
C
|
A:VAL39
|
4.0
|
19.8
|
1.0
|
CB
|
A:SER17
|
4.0
|
25.8
|
1.0
|
N9A
|
A:NAP301
|
4.1
|
17.6
|
0.7
|
C
|
A:GLY15
|
4.3
|
19.6
|
1.0
|
CG
|
A:ARG40
|
4.3
|
26.6
|
1.0
|
C3B
|
A:NAP301
|
4.3
|
19.2
|
0.7
|
N
|
A:ALA16
|
4.4
|
20.2
|
1.0
|
O3X
|
A:NAP301
|
4.4
|
21.9
|
0.7
|
N
|
A:SER17
|
4.4
|
20.6
|
1.0
|
C
|
A:THR38
|
4.5
|
18.5
|
1.0
|
N
|
A:VAL39
|
4.5
|
18.2
|
1.0
|
N
|
A:GLY15
|
4.6
|
19.1
|
1.0
|
CB
|
A:VAL39
|
4.7
|
21.7
|
1.0
|
CB
|
A:ARG40
|
4.7
|
24.7
|
1.0
|
CA
|
A:ARG40
|
4.8
|
24.3
|
1.0
|
O4B
|
A:NAP301
|
4.9
|
19.1
|
0.7
|
NE
|
A:ARG40
|
4.9
|
28.0
|
1.0
|
CA
|
A:SER17
|
4.9
|
19.8
|
1.0
|
N1A
|
A:NAP301
|
4.9
|
19.2
|
0.7
|
O
|
A:LEU64
|
4.9
|
20.4
|
1.0
|
O
|
A:VAL39
|
4.9
|
20.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 5uzx
Go back to
Chlorine Binding Sites List in 5uzx
Chlorine binding site 2 out
of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:24.9
occ:1.00
|
O
|
A:HOH593
|
3.0
|
33.9
|
1.0
|
N
|
A:GLY144
|
3.1
|
20.8
|
1.0
|
N
|
A:GLY190
|
3.1
|
20.8
|
1.0
|
CA
|
A:GLY190
|
3.6
|
23.4
|
1.0
|
CD
|
A:PRO189
|
3.6
|
17.3
|
1.0
|
C5N
|
A:NAP301
|
3.7
|
18.1
|
0.7
|
N
|
A:PRO189
|
3.7
|
16.5
|
1.0
|
C
|
A:ALA188
|
3.8
|
17.8
|
1.0
|
CB
|
A:ALA188
|
3.8
|
21.3
|
1.0
|
C
|
A:GLY190
|
3.8
|
26.1
|
1.0
|
O1
|
A:EDO304
|
3.8
|
36.6
|
0.5
|
O
|
A:GLY190
|
3.8
|
26.0
|
1.0
|
CA
|
A:GLY144
|
3.9
|
18.2
|
1.0
|
CA
|
A:ALA188
|
3.9
|
15.4
|
1.0
|
OG
|
A:SER143
|
4.0
|
19.4
|
1.0
|
C
|
A:SER143
|
4.0
|
16.6
|
1.0
|
CA
|
A:SER143
|
4.0
|
18.0
|
1.0
|
O
|
A:HOH534
|
4.2
|
33.7
|
1.0
|
C
|
A:PRO189
|
4.2
|
21.8
|
1.0
|
C4N
|
A:NAP301
|
4.2
|
19.3
|
0.7
|
O
|
A:ALA188
|
4.4
|
19.9
|
1.0
|
CG
|
A:PRO189
|
4.4
|
18.6
|
1.0
|
CA
|
A:PRO189
|
4.5
|
18.7
|
1.0
|
CB
|
A:SER143
|
4.6
|
19.8
|
1.0
|
N
|
A:TRP191
|
4.6
|
26.3
|
1.0
|
C6N
|
A:NAP301
|
4.7
|
16.6
|
0.7
|
C
|
A:GLY144
|
4.9
|
17.9
|
1.0
|
N
|
A:GLN145
|
5.0
|
17.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 5uzx
Go back to
Chlorine Binding Sites List in 5uzx
Chlorine binding site 3 out
of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:36.6
occ:1.00
|
O
|
B:HOH438
|
2.9
|
19.3
|
1.0
|
O2B
|
B:NAP301
|
3.0
|
18.6
|
0.8
|
N3A
|
B:NAP301
|
3.0
|
16.0
|
0.8
|
O
|
B:HOH409
|
3.3
|
27.4
|
1.0
|
CA
|
B:GLY15
|
3.6
|
16.7
|
1.0
|
OG
|
B:SER17
|
3.6
|
21.0
|
1.0
|
O3B
|
B:NAP301
|
3.7
|
16.6
|
0.8
|
CA
|
B:VAL39
|
3.7
|
19.2
|
1.0
|
O
|
B:THR38
|
3.7
|
18.8
|
1.0
|
C2A
|
B:NAP301
|
3.7
|
16.9
|
0.8
|
N
|
B:ARG40
|
3.7
|
19.9
|
1.0
|
C1B
|
B:NAP301
|
3.7
|
18.4
|
0.8
|
C2B
|
B:NAP301
|
3.9
|
17.9
|
0.8
|
C4A
|
B:NAP301
|
3.9
|
14.4
|
0.8
|
O1X
|
B:NAP301
|
3.9
|
18.4
|
0.8
|
C
|
B:VAL39
|
4.0
|
18.5
|
1.0
|
P2B
|
B:NAP301
|
4.0
|
19.3
|
0.8
|
C
|
B:GLY15
|
4.1
|
18.4
|
1.0
|
CB
|
B:SER17
|
4.2
|
19.4
|
1.0
|
N
|
B:ALA16
|
4.2
|
16.5
|
1.0
|
CG
|
B:ARG40
|
4.2
|
25.8
|
1.0
|
N9A
|
B:NAP301
|
4.2
|
17.2
|
0.8
|
C
|
B:THR38
|
4.3
|
17.4
|
1.0
|
N
|
B:SER17
|
4.4
|
17.7
|
1.0
|
N
|
B:VAL39
|
4.4
|
18.1
|
1.0
|
C3B
|
B:NAP301
|
4.4
|
15.6
|
0.8
|
N
|
B:GLY15
|
4.4
|
15.7
|
1.0
|
O3X
|
B:NAP301
|
4.6
|
20.2
|
0.8
|
CB
|
B:VAL39
|
4.7
|
21.4
|
1.0
|
CB
|
B:ARG40
|
4.8
|
22.4
|
1.0
|
CA
|
B:ARG40
|
4.8
|
23.5
|
1.0
|
O
|
B:LEU64
|
4.8
|
18.0
|
1.0
|
CA
|
B:SER17
|
4.9
|
17.9
|
1.0
|
O
|
B:VAL39
|
4.9
|
20.0
|
1.0
|
NE
|
B:ARG40
|
4.9
|
24.2
|
1.0
|
N1A
|
B:NAP301
|
4.9
|
14.1
|
0.8
|
O4B
|
B:NAP301
|
5.0
|
18.1
|
0.8
|
|
Chlorine binding site 4 out
of 4 in 5uzx
Go back to
Chlorine Binding Sites List in 5uzx
Chlorine binding site 4 out
of 4 in the Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:22.2
occ:1.00
|
N
|
B:GLY144
|
3.0
|
18.4
|
1.0
|
O
|
B:HOH610
|
3.0
|
34.8
|
1.0
|
N
|
B:GLY190
|
3.2
|
18.8
|
1.0
|
CA
|
B:GLY190
|
3.6
|
20.0
|
1.0
|
CB
|
B:ALA188
|
3.7
|
18.7
|
1.0
|
O2
|
B:EDO307
|
3.7
|
24.9
|
0.5
|
C5N
|
B:NAP301
|
3.7
|
18.0
|
0.8
|
CD
|
B:PRO189
|
3.7
|
15.3
|
1.0
|
N
|
B:PRO189
|
3.7
|
14.6
|
1.0
|
C
|
B:ALA188
|
3.8
|
17.0
|
1.0
|
CA
|
B:GLY144
|
3.8
|
17.6
|
1.0
|
C
|
B:GLY190
|
3.8
|
22.3
|
1.0
|
CA
|
B:ALA188
|
3.8
|
14.1
|
1.0
|
O
|
B:GLY190
|
3.9
|
21.2
|
1.0
|
C
|
B:SER143
|
4.0
|
17.8
|
1.0
|
OG
|
B:SER143
|
4.0
|
17.9
|
1.0
|
CA
|
B:SER143
|
4.0
|
16.5
|
1.0
|
C4N
|
B:NAP301
|
4.2
|
18.7
|
0.8
|
C
|
B:PRO189
|
4.3
|
18.3
|
1.0
|
O
|
B:ALA188
|
4.4
|
18.1
|
1.0
|
CG
|
B:PRO189
|
4.5
|
18.2
|
1.0
|
O
|
B:HOH539
|
4.6
|
36.9
|
1.0
|
CA
|
B:PRO189
|
4.6
|
18.5
|
1.0
|
CB
|
B:SER143
|
4.6
|
19.3
|
1.0
|
O
|
B:HOH617
|
4.6
|
51.0
|
1.0
|
N
|
B:TRP191
|
4.6
|
20.5
|
1.0
|
C6N
|
B:NAP301
|
4.7
|
16.2
|
0.8
|
O
|
B:HOH621
|
4.9
|
33.8
|
1.0
|
C
|
B:GLY144
|
4.9
|
18.2
|
1.0
|
O1
|
B:EDO307
|
5.0
|
21.9
|
0.5
|
N
|
B:GLN145
|
5.0
|
17.9
|
1.0
|
C2
|
B:EDO307
|
5.0
|
29.1
|
0.5
|
|
Reference:
S.L.Delker,
S.J.Mayclin,
D.Lorimer,
T.E.Edwards.
Crystal Structure of Putative Short-Chain Dehydrogenase/Reductase From Burkholderia Multivorans with Bound Nadp To Be Published.
Page generated: Fri Jul 26 18:29:56 2024
|