Chlorine in PDB 5vba: Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
Enzymatic activity of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
All present enzymatic activity of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion:
3.2.1.17;
Protein crystallography data
The structure of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion, PDB code: 5vba
was solved by
K.V.Korotkov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
59.54 /
2.27
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.140,
81.690,
160.020,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21.4 /
25.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
(pdb code 5vba). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the
Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion, PDB code: 5vba:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 1 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1201
b:82.2
occ:1.00
|
HG1
|
A:THR1021
|
2.5
|
0.7
|
1.0
|
|
H
|
A:HIS73
|
2.7
|
83.4
|
1.0
|
|
HD2
|
A:HIS73
|
2.8
|
94.8
|
1.0
|
|
OG1
|
A:THR1021
|
2.9
|
88.1
|
1.0
|
|
HB3
|
A:HIS73
|
3.0
|
90.3
|
1.0
|
|
HB2
|
A:ASP72
|
3.2
|
80.6
|
1.0
|
|
N
|
A:HIS73
|
3.4
|
69.5
|
1.0
|
|
CD2
|
A:HIS73
|
3.4
|
79.0
|
1.0
|
|
CB
|
A:HIS73
|
3.7
|
75.3
|
1.0
|
|
H
|
A:THR1021
|
3.7
|
98.3
|
1.0
|
|
HA
|
A:ASP72
|
3.7
|
71.5
|
1.0
|
|
CG
|
A:HIS73
|
3.8
|
79.6
|
1.0
|
|
CB
|
A:ASP72
|
4.0
|
67.1
|
1.0
|
|
OH
|
A:TYR1018
|
4.1
|
69.2
|
1.0
|
|
CA
|
A:HIS73
|
4.1
|
71.2
|
1.0
|
|
N
|
A:THR1021
|
4.2
|
81.9
|
1.0
|
|
CA
|
A:ASP72
|
4.2
|
59.6
|
1.0
|
|
C
|
A:ASP72
|
4.2
|
69.1
|
1.0
|
|
CB
|
A:THR1021
|
4.3
|
84.4
|
1.0
|
|
HA
|
A:ASP1020
|
4.3
|
93.7
|
1.0
|
|
HH
|
A:TYR1018
|
4.4
|
83.1
|
1.0
|
|
HA
|
A:HIS73
|
4.5
|
85.5
|
1.0
|
|
HB3
|
A:ASP72
|
4.5
|
80.6
|
1.0
|
|
HB2
|
A:HIS73
|
4.5
|
90.3
|
1.0
|
|
HA
|
A:THR1021
|
4.6
|
0.7
|
1.0
|
|
NE2
|
A:HIS73
|
4.6
|
81.6
|
1.0
|
|
CA
|
A:THR1021
|
4.6
|
84.8
|
1.0
|
|
HE2
|
A:TYR1018
|
4.7
|
79.8
|
1.0
|
|
HB
|
A:THR1021
|
4.8
|
0.3
|
1.0
|
|
HG23
|
A:THR1021
|
4.9
|
91.3
|
1.0
|
|
C
|
A:ASP1020
|
4.9
|
80.3
|
1.0
|
|
HE2
|
A:HIS73
|
4.9
|
97.9
|
1.0
|
|
HB2
|
A:ASP1020
|
5.0
|
91.6
|
1.0
|
|
Chlorine binding site 2 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 2 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1202
b:64.4
occ:1.00
|
HG
|
A:SER1117
|
2.6
|
73.7
|
1.0
|
|
H
|
A:SER1117
|
2.6
|
87.2
|
1.0
|
|
HA
|
A:PHE1114
|
2.9
|
79.0
|
1.0
|
|
HB2
|
A:ASN1116
|
2.9
|
99.9
|
1.0
|
|
HD2
|
A:PHE1114
|
3.2
|
71.4
|
1.0
|
|
OD1
|
A:ASN1132
|
3.3
|
63.4
|
1.0
|
|
H
|
A:ASN1116
|
3.3
|
84.7
|
1.0
|
|
HB3
|
A:PHE1114
|
3.3
|
80.1
|
1.0
|
|
OG
|
A:SER1117
|
3.3
|
61.4
|
1.0
|
|
N
|
A:SER1117
|
3.5
|
72.7
|
1.0
|
|
CA
|
A:PHE1114
|
3.5
|
65.8
|
1.0
|
|
HB2
|
A:SER1117
|
3.5
|
90.7
|
1.0
|
|
C
|
A:PHE1114
|
3.7
|
68.0
|
1.0
|
|
CB
|
A:PHE1114
|
3.8
|
66.8
|
1.0
|
|
CB
|
A:ASN1116
|
3.8
|
83.2
|
1.0
|
|
N
|
A:ASN1116
|
3.8
|
70.6
|
1.0
|
|
CB
|
A:SER1117
|
3.9
|
75.6
|
1.0
|
|
CD2
|
A:PHE1114
|
3.9
|
59.5
|
1.0
|
|
O
|
A:PHE1114
|
4.0
|
62.5
|
1.0
|
|
N
|
A:THR1115
|
4.1
|
72.9
|
1.0
|
|
CA
|
A:ASN1116
|
4.2
|
75.3
|
1.0
|
|
H
|
A:THR1115
|
4.2
|
87.5
|
1.0
|
|
CG
|
A:PHE1114
|
4.2
|
57.2
|
1.0
|
|
HD22
|
A:ASN1116
|
4.3
|
0.9
|
1.0
|
|
CA
|
A:SER1117
|
4.3
|
66.5
|
1.0
|
|
C
|
A:ASN1116
|
4.3
|
70.9
|
1.0
|
|
HB3
|
A:ASN1116
|
4.5
|
99.9
|
1.0
|
|
CG
|
A:ASN1132
|
4.5
|
64.6
|
1.0
|
|
CG
|
A:ASN1116
|
4.6
|
92.5
|
1.0
|
|
HD23
|
A:LEU1133
|
4.6
|
60.5
|
1.0
|
|
ND2
|
A:ASN1116
|
4.7
|
94.0
|
1.0
|
|
HB2
|
A:PHE1114
|
4.7
|
80.1
|
1.0
|
|
HB3
|
A:SER1117
|
4.8
|
90.7
|
1.0
|
|
C
|
A:THR1115
|
4.8
|
66.3
|
1.0
|
|
HA
|
A:LEU1133
|
4.8
|
57.8
|
1.0
|
|
HA
|
A:SER1117
|
4.8
|
79.8
|
1.0
|
|
O
|
A:GLY1113
|
4.8
|
78.6
|
1.0
|
|
N
|
A:PHE1114
|
4.9
|
77.5
|
1.0
|
|
CE2
|
A:PHE1114
|
4.9
|
69.5
|
1.0
|
|
HB3
|
A:ASN1132
|
4.9
|
62.4
|
1.0
|
|
H
|
A:LEU1118
|
5.0
|
77.5
|
1.0
|
|
Chlorine binding site 3 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 3 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1203
b:64.5
occ:1.00
|
H
|
A:GLU1128
|
2.6
|
59.7
|
1.0
|
|
HB3
|
A:ARG1125
|
2.8
|
66.5
|
1.0
|
|
HA
|
A:ARG1125
|
2.8
|
61.9
|
1.0
|
|
HG3
|
A:GLU1128
|
2.8
|
80.5
|
1.0
|
|
H
|
A:ASP1127
|
2.9
|
63.1
|
1.0
|
|
HB2
|
A:ASP1127
|
3.0
|
74.8
|
1.0
|
|
CA
|
A:ARG1125
|
3.2
|
51.6
|
1.0
|
|
C
|
A:ARG1125
|
3.2
|
47.3
|
1.0
|
|
CB
|
A:ARG1125
|
3.4
|
55.4
|
1.0
|
|
N
|
A:GLU1128
|
3.4
|
49.8
|
1.0
|
|
N
|
A:ASP1127
|
3.5
|
52.6
|
1.0
|
|
OE1
|
A:GLU1128
|
3.5
|
69.1
|
1.0
|
|
N
|
A:TRP1126
|
3.6
|
53.5
|
1.0
|
|
O
|
A:ARG1125
|
3.6
|
48.7
|
1.0
|
|
CG
|
A:GLU1128
|
3.7
|
67.1
|
1.0
|
|
HB2
|
A:GLU1128
|
3.7
|
65.1
|
1.0
|
|
H
|
A:TRP1126
|
3.7
|
64.2
|
1.0
|
|
HG2
|
A:ARG1125
|
3.7
|
74.8
|
1.0
|
|
CB
|
A:ASP1127
|
3.8
|
62.3
|
1.0
|
|
CA
|
A:ASP1127
|
4.0
|
55.6
|
1.0
|
|
CB
|
A:GLU1128
|
4.1
|
54.3
|
1.0
|
|
CD
|
A:GLU1128
|
4.1
|
74.2
|
1.0
|
|
CG
|
A:ARG1125
|
4.1
|
62.4
|
1.0
|
|
C
|
A:ASP1127
|
4.2
|
53.5
|
1.0
|
|
HB2
|
A:ARG1125
|
4.2
|
66.5
|
1.0
|
|
C
|
A:TRP1126
|
4.3
|
50.4
|
1.0
|
|
CA
|
A:GLU1128
|
4.3
|
56.1
|
1.0
|
|
HB3
|
A:ASP1127
|
4.4
|
74.8
|
1.0
|
|
HG2
|
A:GLU1128
|
4.4
|
80.5
|
1.0
|
|
CA
|
A:TRP1126
|
4.6
|
49.3
|
1.0
|
|
HG3
|
A:ARG1125
|
4.6
|
74.8
|
1.0
|
|
N
|
A:ARG1125
|
4.6
|
54.3
|
1.0
|
|
HE
|
A:ARG1125
|
4.7
|
93.4
|
1.0
|
|
CG
|
A:ASP1127
|
4.7
|
69.3
|
1.0
|
|
HA
|
A:GLU1128
|
4.9
|
67.4
|
1.0
|
|
H
|
A:ALA1129
|
4.9
|
67.5
|
1.0
|
|
O
|
A:LYS1124
|
4.9
|
49.9
|
1.0
|
|
OD2
|
A:ASP1127
|
4.9
|
68.2
|
1.0
|
|
HA
|
A:ASP1127
|
4.9
|
66.7
|
1.0
|
|
HB3
|
A:GLU1128
|
5.0
|
65.1
|
1.0
|
|
Chlorine binding site 4 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 4 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1204
b:76.7
occ:1.00
|
H
|
A:ARG1145
|
2.6
|
71.4
|
1.0
|
|
HB2
|
A:ASN1144
|
2.9
|
73.4
|
1.0
|
|
HB
|
A:THR1142
|
3.0
|
92.2
|
1.0
|
|
H
|
A:ASN1144
|
3.0
|
71.5
|
1.0
|
|
HA
|
A:THR1142
|
3.2
|
86.0
|
1.0
|
|
N
|
A:ARG1145
|
3.4
|
59.5
|
1.0
|
|
HD2
|
A:PRO1143
|
3.5
|
89.5
|
1.0
|
|
N
|
A:ASN1144
|
3.6
|
59.6
|
1.0
|
|
C
|
A:THR1142
|
3.6
|
74.0
|
1.0
|
|
HB3
|
A:ARG1145
|
3.6
|
73.7
|
1.0
|
|
CA
|
A:THR1142
|
3.6
|
71.6
|
1.0
|
|
CB
|
A:THR1142
|
3.6
|
76.8
|
1.0
|
|
HG22
|
A:THR1142
|
3.7
|
88.7
|
1.0
|
|
HB2
|
A:ARG1145
|
3.7
|
73.7
|
1.0
|
|
CB
|
A:ASN1144
|
3.8
|
61.1
|
1.0
|
|
O
|
A:GLN68
|
3.8
|
75.7
|
1.0
|
|
N
|
A:PRO1143
|
3.9
|
74.6
|
1.0
|
|
O
|
A:THR1142
|
4.0
|
73.6
|
1.0
|
|
CB
|
A:ARG1145
|
4.0
|
61.4
|
1.0
|
|
CA
|
A:ASN1144
|
4.0
|
57.8
|
1.0
|
|
CD
|
A:PRO1143
|
4.1
|
74.5
|
1.0
|
|
CG2
|
A:THR1142
|
4.1
|
73.9
|
1.0
|
|
C
|
A:ASN1144
|
4.2
|
58.0
|
1.0
|
|
OD1
|
A:ASN1144
|
4.2
|
63.6
|
1.0
|
|
CA
|
A:ARG1145
|
4.3
|
60.6
|
1.0
|
|
CG
|
A:ASN1144
|
4.4
|
67.7
|
1.0
|
|
C
|
A:PRO1143
|
4.4
|
59.3
|
1.0
|
|
HD3
|
A:PRO1143
|
4.5
|
89.5
|
1.0
|
|
HB3
|
A:ASN1144
|
4.5
|
73.4
|
1.0
|
|
HG21
|
A:THR1142
|
4.5
|
88.7
|
1.0
|
|
HA3
|
A:GLY69
|
4.6
|
75.2
|
1.0
|
|
CA
|
A:PRO1143
|
4.7
|
69.9
|
1.0
|
|
H
|
A:ALA1146
|
4.8
|
64.9
|
1.0
|
|
HH22
|
A:ARG1148
|
4.8
|
54.0
|
1.0
|
|
HA
|
A:ARG1145
|
4.9
|
72.7
|
1.0
|
|
OG1
|
A:THR1142
|
4.9
|
72.5
|
1.0
|
|
HG23
|
A:THR1142
|
5.0
|
88.7
|
1.0
|
|
HG1
|
A:THR1142
|
5.0
|
87.1
|
1.0
|
|
HA
|
A:ASN1144
|
5.0
|
69.4
|
1.0
|
|
C
|
A:GLN68
|
5.0
|
64.0
|
1.0
|
|
Chlorine binding site 5 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 5 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1205
b:71.9
occ:1.00
|
H
|
A:LYS217
|
2.1
|
87.8
|
1.0
|
|
H
|
A:ALA218
|
2.6
|
75.2
|
1.0
|
|
N
|
A:LYS217
|
2.9
|
73.2
|
1.0
|
|
HG2
|
A:LYS217
|
3.0
|
93.0
|
1.0
|
|
HB2
|
A:LYS217
|
3.2
|
91.0
|
1.0
|
|
HA
|
A:THR216
|
3.3
|
73.0
|
1.0
|
|
HB
|
A:THR216
|
3.3
|
73.8
|
1.0
|
|
N
|
A:ALA218
|
3.4
|
62.7
|
1.0
|
|
HD13
|
A:LEU263
|
3.5
|
76.2
|
1.0
|
|
HB3
|
A:LEU263
|
3.5
|
70.0
|
1.0
|
|
CB
|
A:LYS217
|
3.7
|
75.8
|
1.0
|
|
CA
|
A:LYS217
|
3.7
|
68.7
|
1.0
|
|
HB3
|
A:ALA218
|
3.8
|
71.2
|
1.0
|
|
CG
|
A:LYS217
|
3.8
|
77.5
|
1.0
|
|
CA
|
A:THR216
|
3.8
|
60.8
|
1.0
|
|
C
|
A:THR216
|
3.8
|
60.4
|
1.0
|
|
CB
|
A:THR216
|
4.0
|
61.4
|
1.0
|
|
HB2
|
A:ALA218
|
4.0
|
71.2
|
1.0
|
|
HD11
|
A:ILE236
|
4.0
|
0.5
|
1.0
|
|
C
|
A:LYS217
|
4.1
|
65.2
|
1.0
|
|
HG3
|
A:LYS217
|
4.2
|
93.0
|
1.0
|
|
HG22
|
A:THR216
|
4.2
|
70.0
|
1.0
|
|
CB
|
A:ALA218
|
4.2
|
59.3
|
1.0
|
|
HG13
|
A:ILE236
|
4.3
|
0.8
|
1.0
|
|
HD12
|
A:LEU263
|
4.3
|
76.2
|
1.0
|
|
CD1
|
A:LEU263
|
4.3
|
63.5
|
1.0
|
|
CB
|
A:LEU263
|
4.4
|
58.3
|
1.0
|
|
CA
|
A:ALA218
|
4.4
|
62.3
|
1.0
|
|
HB2
|
A:LEU263
|
4.4
|
70.0
|
1.0
|
|
HA
|
A:LYS217
|
4.6
|
82.4
|
1.0
|
|
HB3
|
A:LYS217
|
4.6
|
91.0
|
1.0
|
|
CG2
|
A:THR216
|
4.7
|
58.3
|
1.0
|
|
CD1
|
A:ILE236
|
4.8
|
91.3
|
1.0
|
|
O
|
A:LEU263
|
4.8
|
58.4
|
1.0
|
|
HD12
|
A:ILE236
|
4.9
|
0.5
|
1.0
|
|
CG1
|
A:ILE236
|
4.9
|
87.3
|
1.0
|
|
CG
|
A:LEU263
|
4.9
|
69.4
|
1.0
|
|
HD22
|
A:LEU263
|
5.0
|
91.7
|
1.0
|
|
HD3
|
A:LYS217
|
5.0
|
93.1
|
1.0
|
|
CD
|
A:LYS217
|
5.0
|
77.6
|
1.0
|
|
Chlorine binding site 6 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 6 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1201
b:53.0
occ:1.00
|
H
|
B:ILE1003
|
2.1
|
41.9
|
1.0
|
|
HE21
|
A:GLN1000
|
2.3
|
64.9
|
1.0
|
|
HA
|
B:ASN1002
|
2.8
|
46.4
|
1.0
|
|
HB2
|
B:ASN1002
|
2.8
|
41.7
|
1.0
|
|
HG22
|
B:ILE1003
|
2.8
|
43.0
|
1.0
|
|
NE2
|
A:GLN1000
|
2.8
|
54.1
|
1.0
|
|
N
|
B:ILE1003
|
2.9
|
34.9
|
1.0
|
|
HE2
|
A:TYR998
|
3.0
|
54.1
|
1.0
|
|
HG2
|
A:GLN1000
|
3.1
|
69.4
|
1.0
|
|
HE22
|
A:GLN1000
|
3.2
|
64.9
|
1.0
|
|
HB
|
B:ILE1003
|
3.4
|
41.1
|
1.0
|
|
CA
|
B:ASN1002
|
3.4
|
38.6
|
1.0
|
|
CB
|
B:ASN1002
|
3.4
|
34.7
|
1.0
|
|
HB3
|
A:GLN1000
|
3.4
|
56.3
|
1.0
|
|
CD
|
A:GLN1000
|
3.5
|
56.8
|
1.0
|
|
CG2
|
B:ILE1003
|
3.6
|
35.8
|
1.0
|
|
C
|
B:ASN1002
|
3.6
|
39.4
|
1.0
|
|
CG
|
A:GLN1000
|
3.6
|
57.8
|
1.0
|
|
HB3
|
B:ASN1002
|
3.7
|
41.7
|
1.0
|
|
CB
|
B:ILE1003
|
3.8
|
34.3
|
1.0
|
|
HZ2
|
B:TRP1158
|
3.8
|
41.5
|
1.0
|
|
CA
|
B:ILE1003
|
3.9
|
37.4
|
1.0
|
|
HH2
|
B:TRP1158
|
3.9
|
38.5
|
1.0
|
|
CE2
|
A:TYR998
|
3.9
|
45.1
|
1.0
|
|
HG21
|
B:ILE1003
|
4.0
|
43.0
|
1.0
|
|
CB
|
A:GLN1000
|
4.0
|
46.9
|
1.0
|
|
HA
|
A:GLN1000
|
4.2
|
60.3
|
1.0
|
|
O
|
A:HOH1306
|
4.3
|
41.4
|
1.0
|
|
CZ2
|
B:TRP1158
|
4.3
|
34.6
|
1.0
|
|
HG23
|
B:ILE1003
|
4.4
|
43.0
|
1.0
|
|
CH2
|
B:TRP1158
|
4.4
|
32.1
|
1.0
|
|
OH
|
A:TYR998
|
4.4
|
38.2
|
1.0
|
|
HA
|
B:ILE1003
|
4.5
|
44.9
|
1.0
|
|
H
|
B:PHE1004
|
4.5
|
43.9
|
1.0
|
|
HG3
|
A:GLN1000
|
4.5
|
69.4
|
1.0
|
|
OE1
|
A:GLN1000
|
4.6
|
43.0
|
1.0
|
|
CZ
|
A:TYR998
|
4.7
|
40.4
|
1.0
|
|
N
|
B:ASN1002
|
4.7
|
39.2
|
1.0
|
|
CA
|
A:GLN1000
|
4.7
|
50.2
|
1.0
|
|
O
|
B:GLY1001
|
4.7
|
37.0
|
1.0
|
|
CG
|
B:ASN1002
|
4.8
|
42.1
|
1.0
|
|
HB2
|
A:GLN1000
|
4.8
|
56.3
|
1.0
|
|
HD2
|
A:TYR998
|
4.8
|
54.4
|
1.0
|
|
O
|
B:ASN1002
|
4.8
|
31.6
|
1.0
|
|
O
|
A:HOH1322
|
4.9
|
42.3
|
1.0
|
|
CD2
|
A:TYR998
|
4.9
|
45.3
|
1.0
|
|
Chlorine binding site 7 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 7 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1202
b:55.4
occ:1.00
|
HE21
|
B:GLN138
|
2.0
|
40.9
|
1.0
|
|
H
|
B:GLN138
|
2.3
|
48.8
|
1.0
|
|
HD2
|
B:PRO137
|
2.6
|
54.7
|
1.0
|
|
HB1
|
B:ALA136
|
2.6
|
60.8
|
1.0
|
|
HG2
|
B:GLN138
|
2.8
|
52.4
|
1.0
|
|
HB3
|
B:GLN138
|
2.8
|
45.5
|
1.0
|
|
NE2
|
B:GLN138
|
2.9
|
34.0
|
1.0
|
|
N
|
B:GLN138
|
3.2
|
40.6
|
1.0
|
|
CG
|
B:GLN138
|
3.4
|
43.6
|
1.0
|
|
CD
|
B:PRO137
|
3.4
|
45.6
|
1.0
|
|
CB
|
B:GLN138
|
3.4
|
37.9
|
1.0
|
|
HE22
|
B:GLN138
|
3.5
|
40.9
|
1.0
|
|
N
|
B:PRO137
|
3.5
|
45.3
|
1.0
|
|
CB
|
B:ALA136
|
3.6
|
50.7
|
1.0
|
|
CD
|
B:GLN138
|
3.6
|
45.5
|
1.0
|
|
HB2
|
B:PRO137
|
3.7
|
58.5
|
1.0
|
|
CA
|
B:GLN138
|
3.9
|
43.6
|
1.0
|
|
C
|
B:ALA136
|
3.9
|
43.7
|
1.0
|
|
HB3
|
B:ALA136
|
3.9
|
60.8
|
1.0
|
|
HG2
|
B:PRO137
|
4.1
|
64.7
|
1.0
|
|
HE1
|
B:PHE999
|
4.1
|
43.6
|
1.0
|
|
HD3
|
B:PRO137
|
4.1
|
54.7
|
1.0
|
|
C
|
B:PRO137
|
4.1
|
45.7
|
1.0
|
|
CG
|
B:PRO137
|
4.1
|
53.9
|
1.0
|
|
CA
|
B:ALA136
|
4.2
|
46.4
|
1.0
|
|
CA
|
B:PRO137
|
4.2
|
47.0
|
1.0
|
|
HB2
|
B:ALA136
|
4.2
|
60.8
|
1.0
|
|
HA
|
B:ALA136
|
4.2
|
55.7
|
1.0
|
|
CB
|
B:PRO137
|
4.2
|
48.7
|
1.0
|
|
HG3
|
B:GLN138
|
4.3
|
52.4
|
1.0
|
|
HB2
|
B:GLN138
|
4.3
|
45.5
|
1.0
|
|
HA
|
B:GLN138
|
4.5
|
52.4
|
1.0
|
|
O
|
B:ALA136
|
4.6
|
41.3
|
1.0
|
|
CE1
|
B:PHE999
|
4.8
|
36.3
|
1.0
|
|
OE1
|
B:GLN138
|
4.8
|
43.8
|
1.0
|
|
H
|
B:VAL139
|
4.8
|
48.8
|
1.0
|
|
O
|
B:GLN1000
|
5.0
|
40.4
|
1.0
|
|
HZ
|
B:PHE999
|
5.0
|
44.6
|
1.0
|
|
Chlorine binding site 8 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 8 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1203
b:64.7
occ:1.00
|
H
|
B:LYS217
|
2.2
|
66.9
|
1.0
|
|
H
|
B:ALA218
|
2.5
|
67.4
|
1.0
|
|
N
|
B:LYS217
|
3.0
|
55.7
|
1.0
|
|
HB
|
B:THR216
|
3.1
|
47.9
|
1.0
|
|
HA
|
B:THR216
|
3.2
|
49.7
|
1.0
|
|
N
|
B:ALA218
|
3.3
|
56.2
|
1.0
|
|
HG3
|
B:LYS217
|
3.3
|
99.6
|
1.0
|
|
HB2
|
B:LYS217
|
3.3
|
82.7
|
1.0
|
|
HD13
|
B:LEU263
|
3.4
|
70.2
|
1.0
|
|
HB3
|
B:ALA218
|
3.6
|
72.2
|
1.0
|
|
HB3
|
B:LEU263
|
3.6
|
63.3
|
1.0
|
|
CA
|
B:THR216
|
3.8
|
41.4
|
1.0
|
|
CA
|
B:LYS217
|
3.8
|
59.1
|
1.0
|
|
CB
|
B:THR216
|
3.8
|
39.9
|
1.0
|
|
C
|
B:THR216
|
3.8
|
49.0
|
1.0
|
|
CB
|
B:LYS217
|
3.8
|
68.9
|
1.0
|
|
HB2
|
B:ALA218
|
3.8
|
72.2
|
1.0
|
|
HE3
|
B:LYS217
|
3.9
|
0.9
|
1.0
|
|
HE2
|
B:LYS217
|
4.0
|
0.9
|
1.0
|
|
CG
|
B:LYS217
|
4.0
|
83.0
|
1.0
|
|
C
|
B:LYS217
|
4.0
|
57.2
|
1.0
|
|
HD11
|
B:ILE236
|
4.0
|
83.5
|
1.0
|
|
CB
|
B:ALA218
|
4.1
|
60.1
|
1.0
|
|
HG22
|
B:THR216
|
4.1
|
56.6
|
1.0
|
|
HD12
|
B:LEU263
|
4.2
|
70.2
|
1.0
|
|
CD1
|
B:LEU263
|
4.3
|
58.5
|
1.0
|
|
CA
|
B:ALA218
|
4.3
|
54.7
|
1.0
|
|
CE
|
B:LYS217
|
4.4
|
0.1
|
1.0
|
|
HG13
|
B:ILE236
|
4.4
|
82.2
|
1.0
|
|
CB
|
B:LEU263
|
4.4
|
52.7
|
1.0
|
|
CG2
|
B:THR216
|
4.5
|
47.1
|
1.0
|
|
HB2
|
B:LEU263
|
4.5
|
63.3
|
1.0
|
|
HA
|
B:LYS217
|
4.7
|
70.9
|
1.0
|
|
HG2
|
B:LYS217
|
4.7
|
99.6
|
1.0
|
|
HB3
|
B:LYS217
|
4.8
|
82.7
|
1.0
|
|
CD1
|
B:ILE236
|
4.8
|
69.6
|
1.0
|
|
CD
|
B:LYS217
|
4.8
|
96.6
|
1.0
|
|
HG21
|
B:THR216
|
4.8
|
56.6
|
1.0
|
|
HD12
|
B:ILE236
|
4.9
|
83.5
|
1.0
|
|
HG1
|
B:THR216
|
4.9
|
55.1
|
1.0
|
|
OG1
|
B:THR216
|
4.9
|
46.0
|
1.0
|
|
CG
|
B:LEU263
|
4.9
|
58.1
|
1.0
|
|
O
|
B:LEU263
|
4.9
|
53.3
|
1.0
|
|
HA
|
B:ALA218
|
5.0
|
65.7
|
1.0
|
|
HD11
|
B:LEU263
|
5.0
|
70.2
|
1.0
|
|
HB1
|
B:ALA218
|
5.0
|
72.2
|
1.0
|
|
O
|
B:THR216
|
5.0
|
50.8
|
1.0
|
|
Chlorine binding site 9 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 9 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1204
b:64.4
occ:1.00
|
H
|
B:ARG1145
|
2.4
|
57.2
|
1.0
|
|
HB
|
B:THR1142
|
2.7
|
74.0
|
1.0
|
|
HB2
|
B:ASN1144
|
2.7
|
71.8
|
1.0
|
|
H
|
B:ASN1144
|
2.9
|
64.0
|
1.0
|
|
HD22
|
B:ASN1144
|
3.0
|
84.1
|
1.0
|
|
HA
|
B:THR1142
|
3.1
|
70.4
|
1.0
|
|
N
|
B:ARG1145
|
3.2
|
47.7
|
1.0
|
|
N
|
B:ASN1144
|
3.4
|
53.3
|
1.0
|
|
CB
|
B:THR1142
|
3.4
|
61.6
|
1.0
|
|
C
|
B:THR1142
|
3.4
|
59.5
|
1.0
|
|
CA
|
B:THR1142
|
3.4
|
58.6
|
1.0
|
|
HB3
|
B:ARG1145
|
3.4
|
57.6
|
1.0
|
|
HG22
|
B:THR1142
|
3.5
|
65.8
|
1.0
|
|
HB2
|
B:ARG1145
|
3.5
|
57.6
|
1.0
|
|
CB
|
B:ASN1144
|
3.6
|
59.8
|
1.0
|
|
O
|
B:THR1142
|
3.7
|
59.5
|
1.0
|
|
HD2
|
B:PRO1143
|
3.8
|
79.0
|
1.0
|
|
ND2
|
B:ASN1144
|
3.8
|
70.0
|
1.0
|
|
CA
|
B:ASN1144
|
3.8
|
51.2
|
1.0
|
|
N
|
B:PRO1143
|
3.8
|
61.9
|
1.0
|
|
CB
|
B:ARG1145
|
3.9
|
48.0
|
1.0
|
|
CG2
|
B:THR1142
|
3.9
|
54.9
|
1.0
|
|
C
|
B:ASN1144
|
4.0
|
52.7
|
1.0
|
|
CA
|
B:ARG1145
|
4.1
|
45.6
|
1.0
|
|
CG
|
B:ASN1144
|
4.2
|
65.7
|
1.0
|
|
C
|
B:PRO1143
|
4.3
|
56.3
|
1.0
|
|
HB3
|
B:ASN1144
|
4.3
|
71.8
|
1.0
|
|
CD
|
B:PRO1143
|
4.3
|
65.8
|
1.0
|
|
HG21
|
B:THR1142
|
4.3
|
65.8
|
1.0
|
|
HD21
|
B:ASN1144
|
4.5
|
84.1
|
1.0
|
|
H
|
B:ALA1146
|
4.6
|
53.4
|
1.0
|
|
OG1
|
B:THR1142
|
4.6
|
51.8
|
1.0
|
|
HG2
|
B:PRO1143
|
4.6
|
82.7
|
1.0
|
|
CA
|
B:PRO1143
|
4.7
|
63.4
|
1.0
|
|
HA
|
B:ARG1145
|
4.7
|
54.8
|
1.0
|
|
HG1
|
B:THR1142
|
4.7
|
62.2
|
1.0
|
|
HA
|
B:ASN1144
|
4.8
|
61.5
|
1.0
|
|
HG23
|
B:THR1142
|
4.8
|
65.8
|
1.0
|
|
HH22
|
B:ARG1148
|
4.8
|
51.8
|
1.0
|
|
N
|
B:THR1142
|
4.9
|
63.3
|
1.0
|
|
Chlorine binding site 10 out
of 10 in 5vba
Go back to
Chlorine Binding Sites List in 5vba
Chlorine binding site 10 out
of 10 in the Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Structure of ESPG1 Chaperone From the Type VII (Esx-1) Secretion System Determined with the Assistance of N-Terminal T4 Lysozyme Fusion within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1205
b:83.5
occ:1.00
|
H
|
B:ASN1116
|
1.9
|
77.1
|
1.0
|
|
HD22
|
B:ASN1116
|
2.0
|
94.9
|
1.0
|
|
O
|
B:HOH1321
|
2.5
|
54.1
|
1.0
|
|
HB2
|
B:ASN1116
|
2.7
|
99.0
|
1.0
|
|
N
|
B:ASN1116
|
2.7
|
64.2
|
1.0
|
|
ND2
|
B:ASN1116
|
2.8
|
79.0
|
1.0
|
|
H
|
B:THR1115
|
2.9
|
78.2
|
1.0
|
|
N
|
B:THR1115
|
3.1
|
65.1
|
1.0
|
|
HA
|
B:PHE1114
|
3.2
|
70.0
|
1.0
|
|
CB
|
B:ASN1116
|
3.3
|
82.5
|
1.0
|
|
HD21
|
B:ASN1116
|
3.3
|
94.9
|
1.0
|
|
H
|
B:SER1117
|
3.4
|
84.5
|
1.0
|
|
CG
|
B:ASN1116
|
3.5
|
77.2
|
1.0
|
|
C
|
B:PHE1114
|
3.5
|
63.5
|
1.0
|
|
CA
|
B:ASN1116
|
3.5
|
73.0
|
1.0
|
|
HB
|
B:THR1115
|
3.6
|
81.3
|
1.0
|
|
C
|
B:THR1115
|
3.7
|
66.5
|
1.0
|
|
HD21
|
B:ASN1132
|
3.8
|
82.9
|
1.0
|
|
CA
|
B:THR1115
|
3.8
|
74.4
|
1.0
|
|
CA
|
B:PHE1114
|
3.8
|
58.3
|
1.0
|
|
O
|
B:GLY1113
|
4.0
|
64.0
|
1.0
|
|
N
|
B:SER1117
|
4.1
|
70.4
|
1.0
|
|
HB3
|
B:ASN1116
|
4.2
|
99.0
|
1.0
|
|
CB
|
B:THR1115
|
4.2
|
67.7
|
1.0
|
|
O
|
B:PHE1114
|
4.2
|
56.4
|
1.0
|
|
HA
|
B:ASN1116
|
4.3
|
87.6
|
1.0
|
|
C
|
B:ASN1116
|
4.4
|
68.5
|
1.0
|
|
ND2
|
B:ASN1132
|
4.5
|
69.0
|
1.0
|
|
HD22
|
B:ASN1132
|
4.5
|
82.9
|
1.0
|
|
OD1
|
B:ASN1116
|
4.7
|
71.5
|
1.0
|
|
HB3
|
B:PHE1114
|
4.7
|
66.9
|
1.0
|
|
HA
|
B:THR1115
|
4.7
|
89.3
|
1.0
|
|
C
|
B:GLY1113
|
4.8
|
62.5
|
1.0
|
|
N
|
B:PHE1114
|
4.8
|
56.4
|
1.0
|
|
O
|
B:THR1115
|
4.9
|
64.3
|
1.0
|
|
CB
|
B:PHE1114
|
4.9
|
55.7
|
1.0
|
|
OG1
|
B:THR1115
|
4.9
|
68.6
|
1.0
|
|
Reference:
A.T.Tuukkanen,
D.Freire,
S.Chan,
M.A.Arbing,
R.W.Reed,
T.J.Evans,
G.Zenkeviciute,
J.Kim,
S.Kahng,
M.R.Sawaya,
C.T.Chaton,
M.Wilmanns,
D.Eisenberg,
A.H.A.Parret,
K.V.Korotkov.
Structural Variability of Espg Chaperones From Mycobacterial Esx-1, Esx-3, and Esx-5 Type VII Secretion Systems. J. Mol. Biol. V. 431 289 2019.
ISSN: ESSN 1089-8638
PubMed: 30419243
DOI: 10.1016/J.JMB.2018.11.003
Page generated: Sat Dec 12 12:33:47 2020
|
