Chlorine in PDB 5vbg: Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae

The structure of Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae, PDB code: 5vbg was solved by K.Sathiyamoorthy, M.A.Saper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.98 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.458, 69.344, 73.577, 90.00, 110.18, 90.00
R / Rfree (%)	20.5 / 24.6

The binding sites of Chlorine atom in the Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae (pdb code 5vbg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae, PDB code: 5vbg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:39.4 occ:1.00 HD22 A:ASN324 2.1 37.9 1.0 H A:LEU320 2.2 41.0 1.0 H A:LEU321 2.3 42.5 1.0 HG1 A:THR296 2.5 47.4 1.0 HB2 A:PRO319 2.8 42.6 1.0 HG A:LEU321 2.8 42.0 1.0 HD3 A:PRO264 2.8 48.0 1.0 ND2 A:ASN324 2.9 31.6 1.0 N A:LEU320 3.0 34.1 1.0 HB3 A:LEU320 3.1 43.6 1.0 N A:LEU321 3.1 35.4 1.0 HG21 A:THR296 3.2 46.8 1.0 HD21 A:ASN324 3.3 37.9 1.0 OG1 A:THR296 3.3 39.5 1.0 HB2 A:ASN324 3.4 37.1 1.0 HB2 A:LEU321 3.5 43.0 1.0 CB A:PRO319 3.5 35.5 1.0 HB3 A:PRO319 3.6 42.6 1.0 CG A:LEU321 3.6 35.0 1.0 CD A:PRO264 3.7 40.0 1.0 CA A:LEU320 3.8 35.3 1.0 HA A:LEU263 3.8 49.1 1.0 HD12 A:LEU321 3.8 45.3 1.0 CB A:LEU320 3.9 36.3 1.0 CB A:LEU321 3.9 35.8 1.0 HA A:PRO319 3.9 40.5 1.0 C A:LEU320 3.9 36.4 1.0 CG A:ASN324 3.9 32.6 1.0 HB A:THR296 3.9 49.5 1.0 CG2 A:THR296 4.0 38.9 1.0 CB A:ASN324 4.0 30.9 1.0 CB A:THR296 4.0 41.2 1.0 C A:PRO319 4.0 34.2 1.0 HB3 A:ASN324 4.0 37.1 1.0 CA A:PRO319 4.0 33.7 1.0 CA A:LEU321 4.1 34.2 1.0 HB3 A:PRO264 4.1 51.6 1.0 N A:PRO264 4.2 39.3 1.0 HG3 A:PRO264 4.2 50.0 1.0 CD1 A:LEU321 4.2 37.7 1.0 HB2 A:LEU320 4.3 43.6 1.0 HG23 A:THR296 4.4 46.8 1.0 C A:LEU263 4.4 40.8 1.0 HD2 A:PRO264 4.4 48.0 1.0 CG A:PRO264 4.4 41.6 1.0 HD11 A:LEU321 4.5 45.3 1.0 CA A:LEU263 4.5 40.9 1.0 CB A:PRO264 4.7 43.0 1.0 HA A:LEU320 4.7 42.4 1.0 HG22 A:THR296 4.7 46.8 1.0 O A:LEU321 4.8 34.3 1.0 CD2 A:LEU321 4.8 35.2 1.0 HD23 A:LEU321 4.8 42.2 1.0 O A:LEU262 4.8 39.2 1.0 HB3 A:LEU321 4.8 43.0 1.0 HA A:LEU321 4.8 41.1 1.0 CG A:PRO319 4.8 34.9 1.0 N A:LEU263 4.9 39.8 1.0 HB3 A:LEU262 4.9 44.7 1.0 CA A:PRO264 4.9 43.2 1.0 HG2 A:PRO319 4.9 42.0 1.0 HA A:PRO264 5.0 51.9 1.0 C A:LEU321 5.0 33.9 1.0 HD21 A:LEU321 5.0 42.2 1.0 HD23 A:LEU320 5.0 48.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Full-Length Lpoa, Monoclinic Form 1, From Haemophilus Influenzae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:44.4 occ:1.00 H A:ALA42 2.4 57.8 1.0 HH21 A:ARG71 2.4 58.0 1.0 HH12 A:ARG75 2.8 57.9 1.0 HE A:ARG71 3.0 59.6 1.0 HA A:ASP41 3.0 58.1 1.0 NH2 A:ARG71 3.2 48.2 1.0 N A:ALA42 3.2 48.1 1.0 HH11 A:ARG75 3.3 57.9 1.0 NH1 A:ARG75 3.4 48.2 1.0 HD2 A:ARG136 3.4 53.6 1.0 HB3 A:ALA42 3.5 58.3 1.0 NE A:ARG71 3.7 49.6 1.0 HB3 A:ASP41 3.7 58.0 1.0 HH22 A:ARG71 3.7 58.0 1.0 CA A:ASP41 3.8 48.4 1.0 OD1 A:ASP41 3.8 47.4 1.0 CZ A:ARG71 3.8 47.5 1.0 HH12 A:ARG170 3.9 64.4 1.0 HH22 A:ARG170 3.9 64.8 1.0 C A:ASP41 4.0 48.5 1.0 CB A:ASP41 4.1 48.3 1.0 HG A:SER132 4.1 56.7 1.0 O A:ALA42 4.2 43.9 1.0 CA A:ALA42 4.2 48.8 1.0 CB A:ALA42 4.2 48.5 1.0 CG A:ASP41 4.3 48.2 1.0 NH1 A:ARG170 4.3 53.6 1.0 NH2 A:ARG170 4.4 54.0 1.0 CD A:ARG136 4.4 44.6 1.0 HB2 A:ALA42 4.4 58.3 1.0 HG2 A:ARG136 4.4 52.8 1.0 OG A:SER132 4.5 47.2 1.0 C A:ALA42 4.5 45.5 1.0 CZ A:ARG75 4.5 47.4 1.0 HG3 A:ARG71 4.6 59.4 1.0 HG3 A:ARG136 4.6 52.8 1.0 CZ A:ARG170 4.6 53.7 1.0 HH22 A:ARG75 4.7 57.2 1.0 CG A:ARG136 4.7 43.9 1.0 HH11 A:ARG170 4.8 64.4 1.0 HH21 A:ARG170 4.9 64.8 1.0 HD3 A:ARG136 4.9 53.6 1.0 CD A:ARG71 4.9 49.1 1.0 HD3 A:ARG75 4.9 55.2 1.0

K.Sathiyamoorthy, J.Vijayalakshmi, B.Tirupati, L.Fan, M.A.Saper. Structural Analyses of the Haemophilus Influenzae Peptidoglycan Synthase Activator Lpoa Suggest Multiple Conformations in Solution. J. Biol. Chem. V. 292 17626 2017.
ISSN: ESSN 1083-351X
PubMed: 28887305
DOI: 10.1074/JBC.M117.804997