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Chlorine in PDB 5vdh: Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin

Protein crystallography data

The structure of Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin, PDB code: 5vdh was solved by P.L.Shaffer, X.Huang, H.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 119.065, 119.065, 429.934, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 23.6

Other elements in 5vdh:

The structure of Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin (pdb code 5vdh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin, PDB code: 5vdh:

Chlorine binding site 1 out of 1 in 5vdh

Go back to Chlorine Binding Sites List in 5vdh
Chlorine binding site 1 out of 1 in the Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Glycine Receptor Alpha-3 Bound to Am-3607, Glycine, and Ivermectin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:0.2
occ:1.00
CB B:ALA254 5.0 0.1 1.0

Reference:

X.Huang, H.Chen, P.L.Shaffer. Crystal Structures of Human Glyr Alpha 3 Bound to Ivermectin. Structure V. 25 945 2017.
ISSN: ISSN 1878-4186
PubMed: 28479061
DOI: 10.1016/J.STR.2017.04.007
Page generated: Sat Dec 12 12:34:08 2020

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