Chlorine in PDB 5vj1: Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A

Enzymatic activity of Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A

All present enzymatic activity of Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A:
2.1.3.1; 2.1.3.10;

Protein crystallography data

The structure of Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A, PDB code: 5vj1 was solved by R.Maderbocus, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.90 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 98.740, 163.560, 100.440, 90.00, 94.01, 90.00
R / Rfree (%) 17.3 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A (pdb code 5vj1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A, PDB code: 5vj1:

Chlorine binding site 1 out of 1 in 5vj1

Go back to Chlorine Binding Sites List in 5vj1
Chlorine binding site 1 out of 1 in the Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Pseudomonas Malonate Decarboxylase Hetero- Tetramer in Complex with Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:57.1
occ:1.00
 ND2 A:ASN59 3.4 57.2 1.0
NE A:ARG341 3.4 51.0 1.0
CG A:PHE312 3.4 56.1 1.0
CD2 A:PHE312 3.6 50.3 1.0
CB A:PHE312 3.7 57.2 1.0
CD1 A:PHE312 3.8 53.5 1.0
OE1 A:GLN345 3.8 51.6 1.0
ND2 A:ASN292 3.8 58.4 1.0
CZ A:PHE226 4.0 42.0 1.0
NH2 A:ARG341 4.0 52.0 1.0
CE2 A:PHE312 4.1 50.3 1.0
CE1 A:TYR134 4.1 50.4 1.0
CZ A:ARG341 4.1 53.2 1.0
CD A:ARG341 4.3 52.0 1.0
CE1 A:PHE312 4.3 49.9 1.0
CE2 A:PHE226 4.4 53.2 1.0
CZ A:PHE312 4.4 52.2 1.0
CD1 A:TYR134 4.6 55.4 1.0
CG A:ASN59 4.7 56.7 1.0
CG A:ASN292 4.9 56.5 1.0
CD A:GLN345 4.9 48.3 1.0
CE1 A:PHE226 4.9 42.5 1.0
CG A:ARG341 4.9 53.2 1.0
OD1 A:ASN292 5.0 57.6 1.0

Reference:

R.Maderbocus, B.L.Fields, K.Hamilton, S.Luo, T.H.Tran, L.E.P.Dietrich, L.Tong. Crystal Structure of A Pseudomonas Malonate Decarboxylase Holoenzyme Hetero-Tetramer. Nat Commun V. 8 160 2017.
ISSN: ESSN 2041-1723
PubMed: 28757619
DOI: 10.1038/S41467-017-00233-Z
Page generated: Sat Dec 12 12:34:20 2020

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